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Interleukin 10 (<i>IL‐10</i>) gene variants and susceptibility for paediatric onset Crohn’s disease

2009· article· en· W2090256315 on OpenAlexafffundabout
Devendra Amre, David R. Mack, Kenneth Morgan, David M. Israel, Philippe Lambrette, Irina Costea, Alfreda Krupoves, Houda Fegury, Jinsong Dong, Guy Grimard, Colette Deslandres, Émile Lévy, Ernest G. Seidman

Bibliographic record

VenueAlimentary Pharmacology & Therapeutics · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsBC Children's HospitalChildren's Hospital of Eastern OntarioMcGill University Health CentreUniversité de MontréalCentre Hospitalier Universitaire Sainte-Justine
FundersCanadian Institutes of Health ResearchCrohn's and Colitis Foundation of Canada
KeywordsSingle-nucleotide polymorphismHaplotypeGenotypeMedicineSNPCrohn's diseaseInflammatory bowel diseaseUlcerative colitisAlleleDiseaseImmunologyCase-control studyGeneGastroenterologyInternal medicineGeneticsBiology

Abstract

fetched live from OpenAlex

Summary Background A recent genome‐wide association study in adult patients with ulcerative colitis (UC) has implicated the interleukin 10 (IL‐10) gene as an important candidate gene. Moreover, a UC‐associated single nucleotide polymorphism (SNP) rs3024405 was also significantly associated with adult Crohn’s disease (CD). Aims To examine whether IL‐10‐CD associations extended to paediatric‐onset CD. Methods We implemented the case‐control design at three paediatric gastroenterology clinics in Canada. CD patients (≤20 years) were recruited along with healthy controls. DNA samples were genotyped for tag‐single nucleotide polymorphisms (tag‐SNPs) in the IL‐10 gene. Allelic, genotype and haplotype associations with CD were studied. Results A total of 270 patients and 336 controls were studied. The mean age (±s.d.) at diagnosis was 12.1 (±3.5). There were a slightly higher proportion of male patients (56.3%). Of the five IL‐10 tag‐SNPs, rs2222202 (C/T) (P = 0.03) and rs1800871 (C/T) (P = 0.05) showed significant allelic associations with CD. Specific IL‐10 SNPs were associated with CD disease location and/or disease behaviour. Conclusions Our gene‐wide analysis replicates recent findings of associations between IL‐10 and adult CD, and suggests that these associations extend to paediatric‐onset CD as well.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.291
Teacher spread0.276 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations46
Published2009
Admission routes3
Has abstractyes

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