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Record W2096738493 · doi:10.5539/sar.v2n4p77

Rapid Identification of Acacia Species With Potential Salt Tolerance by Using Nuclear Ribosomal DNA Markers

2013· article· en· W2096738493 on OpenAlexvenueno aff
Shanthi Joseph, Mrinal Bhave, Joseph T. Miller, Daniel J. Murphy

Bibliographic record

VenueSustainable Agriculture Research · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsnot available
FundersAustralian Research CouncilCommonwealth Scientific and Industrial Research Organisation
KeywordsBiologySalinityInternal transcribed spacerBiodiversityAcaciaRibosomal DNAPhylogenetic treeIntroduced speciesBotanyEcologyGenetics

Abstract

fetched live from OpenAlex

<p>Use of saline lands for agroforestry relies primarily on plant species that have the trait of salinity tolerance, and also other economic and agronomic benefits. The selection of species, however, also needs to consider other key factors such as compatibility with existing flora, and potential for environmental benefits such as improved soil fertility or lowering of the water table in the case of dryland salinity. The testing of candidate species in particular environments needs substantial investments of costs and time. In this paper, a novel approach is presented for the rapid identification of potentially salt tolerant <em>Acacia </em>species, based on molecular phylogenetic analysis. The approach has been applied to four species groups, <em>Acacia pendula, A. salicina, A. victoriae</em> and <em>A. stenophylla</em>. The nuclear-encoded ribosomal DNA internal and external transcribed spacer (ITS and ETS) regions were used as markers, and phylogenetic analyses undertaken to identify closely related species that may share the salt tolerance traits. Such a methodology could be used to more rapidly identify candidate native species for agroforestry in salinity-affected regions and for preventing further expansion of salinity, thus assisting in biodiversity conservation.</p>

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.226
Threshold uncertainty score0.419

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.243
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2013
Admission routes1
Has abstractyes

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