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Record W2100024496 · doi:10.1038/ng.3221

Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

2015· article· en· W2100024496 on OpenAlexaff
Colin S. Cooper, Rosalind A. Eeles, David C. Wedge, Peter Van Loo, Gunes Gundem, Ludmil B. Alexandrov, Bárbara Kremeyer, Adam Butler, Andy G. Lynch, Niedzica Camacho, Charles Massie, Jonathan Kay, Hayley J. Luxton, Sandra E. Edwards, Zsofia Kote‐Jarai, Nening M. Dennis, Sue Merson, Daniel Leongamornlert, Jorge Zamora, Cathy Corbishley, Sarah Thomas, Serena Nik‐Zainal, Manasa Ramakrishna, Sarah O’Meara, Lucy Matthews, Jeremy Clark, Rachel Hurst, Richard Mithen, Robert G. Bristow, Paul C. Boutros, Michael Fraser, Susanna L. Cooke, Keiran Raine, David Jones, Andrew Menzies, Lucy Stebbings, Jon Hinton, Jon W. Teague, Stuart McLaren, Laura Mudie, Claire Hardy, Elizabeth Anderson, Olivia Joseph, Victoria Goody, Ben Robinson, Mark Maddison, Stephen J. Gamble, Christopher Greenman, Daniel M. Berney, Steven Hazell, Naomi Livni, Cyril Fisher, Christopher Ogden, Pardeep Kumar, Alan Thompson, Christopher Woodhouse, David M. Nicol, Erik Mayer, Tim Dudderidge, Nimish Shah, Vincent J. Gnanapragasam, Thierry Voet, Peter J. Campbell, P. Andrew Futreal, Douglas Easton, Anne Y. Warren, Christopher S. Foster, Michael R. Stratton, Hayley C. Whitaker, Ultan McDermott, Daniel S. Brewer, David E. Neal

Bibliographic record

VenueNature Genetics · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsPrincess Margaret Cancer CentreOntario Institute for Cancer ResearchUniversity of TorontoUniversity Health Network
FundersBiotechnology and Biological Sciences Research CouncilVlaamse regeringWellcome TrustHutchison Whampoa LimitedFonds Wetenschappelijk OnderzoekRosetrees TrustNational Institute for Health and Care ResearchCambridge University HospitalsNorth West Cancer ResearchRoyal Marsden NHS Foundation TrustFrancis Crick InstituteUniversity of CambridgeCancer Research UK
KeywordsBiologyProstate cancerCancerCarcinogenesisSomatic evolution in cancerProstateChromothripsisGeneticsPathologyDNAGenome instabilityDNA damage

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.257
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations457
Published2015
Admission routes1
Has abstractno

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