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Record W2100848433 · doi:10.1002/meet.1450400107

Haystacks and hypotheses

2003· article· en· W2100848433 on OpenAlexaff
Jeffrey Demaine, Joel Martin, Berry de Bruijn

Bibliographic record

VenueProceedings of the American Society for Information Science and Technology · 2003
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsNational Research Council Canada
Fundersnot available
KeywordsHaystackProcess (computing)Subject (documents)Computer scienceInformation retrievalTerm (time)Data scienceScientific literatureArtificial intelligenceLibrary scienceBiology

Abstract

fetched live from OpenAlex

Abstract This paper describes the EurekaSeek bibliometric technique for automated linked‐literature analysis. The MEDLINE database of biomedical literature is iteratively searched in order to identify research opportunities in the form of conceptual linkages between terms. As a tool for identifying undiscovered public knowledge, EurekaSeek is a variation on the techniques of Swanson and Smalheiser. EurekaSeek uses medical subject headings instead of text analysis in a fully automated search process, thereby eliminating the reliance on expert input during the process of linking literatures. In this paper, the EurekaSeek process is tested by retroactively examining the co‐occurrence of terms in the published literature. The hypothesis tested in this paper is whether this tool, had it existed in the past, could have identified conceptual linkages that occurred only later in the literature. In addition, EurekaSeek is compared against a process that considers all potential term‐to‐term relationships. The list of terms that EurekaSeek produces is a subset of all potential linked literature terms. The experiment shows that EurekaSeek produces a higher percentage of likely hypotheses than when all terms are considered. While the proportion of identified linkages generated is still too small for the process to be a practical aid to research, statistically significant results were achieved. Metaphorically speaking, EurekaSeek identifies a higher proportion of needles per haystack.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.452
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.003
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.254
Teacher spread0.244 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2003
Admission routes1
Has abstractyes

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