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Record W2102509283 · doi:10.1038/sj.bjc.6601880

Somatic mutations of KIT in familial testicular germ cell tumours

2004· article· en· W2102509283 on OpenAlexaff
Elizabeth Rapley, Sarah L. Hockley, William Warren, L. Johnson, Robert Huddart, Gillian P. Crockford, D Forman, Michael Leahy, Dominik Oliver, Kathy Tucker, Michael Friedländer, Kelly‐Anne Phillips, David Hogg, Michael A.S. Jewett, Radka Lohynská, Gedske Daugaard, Axel Heidenreich, Lajos Géczi, I. Bodrogi, Edith Oláh, W. Ormiston, Peter A. Daly, Leendert H. J. Looijenga, Parry Guilford, Nina Aass, Sophie D. Fosså, Ketil Heimdal, Sergei Tjulandin, Л. Н. Любченко, Hans R. Stoll, William P. Weber, Lawrence H. Einhorn, Barbara L. Weber, Mary L. McMaster, Mark H. Greene, D. Timothy Bishop, Douglas F. Easton, Michael R. Stratton

Bibliographic record

VenueBritish Journal of Cancer · 2004
Typearticle
Languageen
FieldImmunology and Microbiology
TopicMast cells and histamine
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
FundersHungarian Scientific Research FundCancer Research UK
KeywordsSomatic cellMissense mutationGermline mutationBiologyGermlineExonGeneticsGermline mosaicismMutationCancer researchGerm cellProto-Oncogene Proteins c-kitGene

Abstract

fetched live from OpenAlex

Somatic mutations of the KIT gene have been reported in mast cell diseases and gastrointestinal stromal tumours. Recently, they have also been found in mediastinal and testicular germ cell tumours (TGCTs), particularly in cases with bilateral disease. We screened the KIT coding sequence (except exon 1) for germline mutations in 240 pedigrees with two or more cases of TGCT. No germline mutations were found. Exons 10, 11 and 17 of KIT were examined for somatic mutations in 123 TGCT from 93 multiple-case testicular cancer families. Five somatic mutations were identified; four were missense amino-acid substitutions in exon 17 and one was a 12 bp in-frame deletion in exon 11. Two of seven TGCT from cases with bilateral disease carried KIT mutations compared with three out of 116 unilateral cases (P=0.026). The results indicate that somatic KIT mutations are implicated in the development of a minority of familial as well as sporadic TGCT. They also lend support to the hypothesis that KIT mutations primarily take place during embryogenesis such that primordial germ cells with KIT mutations are distributed to both testes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.225
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations96
Published2004
Admission routes1
Has abstractyes

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Same venueBritish Journal of CancerSame topicMast cells and histamineFrench-language works237,207