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Record W2103672183 · doi:10.1017/s0024282912000217

Diversity of<i>Ramalina sinensis</i>and its photobiont in local populations

2012· article· en· W2103672183 on OpenAlexaffabout
P.M. Oliveira, Brinda A. Timsina, Michele D. Piercey‐Normore

Bibliographic record

VenueThe Lichenologist · 2012
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicLichen and fungal ecology
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsBiologyInternal transcribed spacerPhylogenetic treeEcologyLichenPhylogenetic diversityRibosomal DNAGeographical distanceGenetic diversityBotanyPopulationGenetics

Abstract

fetched live from OpenAlex

Abstract Ramalina sinensisis a widespread lichen in the Northern Hemisphere with sparse local populations, and its potential to adapt to changing environmental conditions is unknown. The objectives of this study were to determine whether geographical distance reflects fungal phylogenetic patterns, and to infer algal identity and its pattern of geographical distribution. Twenty-three samples ofR. sinensiswere collected from three geographical regions in Manitoba. The internal transcribed spacer of ribosomal DNA (ITS rDNA) was sequenced from each of the algal and fungal partners, and phylogenetic analyses were performed. Algal haplotypes were estimated and placed on a map of the geographical regions. Although the fungal partner showed no geographical segregation within Manitoba, the divergence of three samples added to the phylogeny from GenBank suggested that a pattern may be evident if broader geographical distances were examined. The photobiont sequence was determined to be most similar to that ofTrebouxia impressaandT. potteri,two widely distributed algal species. The algal partner showed no geographical structure with sequence polymorphism or haplotype analyses. The abundance of sexual reproduction might explain widespread occurrence and the absence of geographical segregation of the fungus. This study suggests that the diversity in each of the symbionts ofR. sinensisshould not be a limiting factor for adaptation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.064
GPT teacher head0.241
Teacher spread0.176 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2012
Admission routes2
Has abstractyes

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