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Record W2105619078 · doi:10.1101/sqb.2003.68.323

High-resolution Human Genome Scanning Using Whole-genome BAC Arrays

2003· article· en· W2105619078 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueCold Spring Harbor Symposia on Quantitative Biology · 2003
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomic variations and chromosomal abnormalities
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsSubtelomereHuman genomeGenomeGeneticsChromosomal rearrangementHigh resolutionBiologyChromosomeMedical geneticsKaryotypeGene

Abstract

fetched live from OpenAlex

Constitutional chromosome abnormalities are a frequent cause of many human syndromes, such as infertility, congenital anomalies, and mental retardation (Gardner and Sutherland 1996). Cytogenetic analysis ofchromosomal integrity in patients with mental retardation (MR) indicates that 40% of severe (IQ<55) and10–20% of mild (IQ = 55–70) MR is caused by chromosomal anomalies (Flint et al. 1995). However, due to thepoor resolution of conventional cytogenetic analysis,subtle chromosomal rearrangements (<3 Mb) may bemissed in a significant proportion of mild MR cases. Recent studies focusing on the subtelomeric regions of patients with idiopathic MR indeed indicated that theprevalence of subtle subtelomeric rearrangements couldbe as high as 6% in these patients (Flint et al. 1995;Knight et al. 1999), and it is now widely accepted thatsubmicroscopic telomeric rearrangements are a significant cause of MR. It is quite natural to hypothesize thata substantial proportion of idiopathic MR may be causedby subtle rearrangements in other parts of the genomethat were never detected due to a low resolution of cytogenetic analysis and the unavailability of high-resolution genome-scanning techniques. The fact that chromosomal rearrangements can occur in almost any region ofthe genome (Brewer et al. 1998, 1999), and the existenceof subtle microdeletions and microduplications alongthe chromosomal arms in over 10 clinical syndromes associated with MR (Shapira 1998), support this hypothesis...

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.476
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.267
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it