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Enhancing disease surveillance with novel data streams: challenges and opportunities

2015· article· en· W2110349231 on OpenAlexaff
Benjamin M. Althouse, Samuel V. Scarpino, Lauren Ancel Meyers, John W. Ayers, Marisa Bargsten, Jan Baumbach, John S. Brownstein, Lauren Castro, Hannah Clapham, Derek A. T. Cummings, Sara Y. Del Valle, Stephen Eubank, Geoffrey Fairchild, Lyn Finelli, Nicholas Generous, Dylan B. George, David R. Harper, Laurent Hébert‐Dufresne, Michael A. Johansson, Kevin Konty, Marc Lipsitch, Gabriel Milinovich, Joseph D. Miller, Elaine O. Nsoesie, Donald R. Olson, Michael J. Paul, Philip M. Polgreen, Reid Priedhorsky, Jonathan M. Read, Isabel Rodríguez-Barraquer, Derek J. Smith, Christian Stefansen, David L. Swerdlow, Deborah Thompson, Alessandro Vespignani, Amy Wesolowski

Bibliographic record

VenueEPJ Data Science · 2015
Typearticle
Languageen
FieldMedicine
TopicData-Driven Disease Surveillance
Canadian institutionsMcGill University
FundersNational Institute of General Medical SciencesEconomic and Social Research CouncilNational Institutes of HealthSanta Fe Institute
KeywordsComputer scienceData sciencePublic health surveillanceSocial mediaPublic healthKey (lock)Big dataManagement scienceComputer securityData miningWorld Wide WebEngineeringMedicine

Abstract

fetched live from OpenAlex

Novel data streams (NDS), such as web search data or social media updates, hold promise for enhancing the capabilities of public health surveillance. In this paper, we outline a conceptual framework for integrating NDS into current public health surveillance. Our approach focuses on two key questions: What are the opportunities for using NDS and what are the minimal tests of validity and utility that must be applied when using NDS? Identifying these opportunities will necessitate the involvement of public health authorities and an appreciation of the diversity of objectives and scales across agencies at different levels (local, state, national, international). We present the case that clearly articulating surveillance objectives and systematically evaluating NDS and comparing the performance of NDS to existing surveillance data and alternative NDS data is critical and has not sufficiently been addressed in many applications of NDS currently in the literature.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.109
metaresearch head score (Gemma)0.228
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.109
Threshold uncertainty score0.576

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1090.228
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0060.007
Science and technology studies0.0010.004
Scholarly communication0.0110.021
Open science0.0030.007
Research integrity0.0030.005
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.281
GPT teacher head0.349
Teacher spread0.068 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations239
Published2015
Admission routes1
Has abstractyes

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