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De novo assembly and analysis of RNA-seq data

2010· article· en· 1,050 citations· W2112888168 on OpenAlex· 10.1038/nmeth.1517

Why is this work in the frame?

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

Canadian affiliationAn author listed a Canadian institution. This is the only route the usual frame has.

Machine scores (provisional)

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Opus teacher head0.022
GPT teacher head0.387
Teacher spread
0.364 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

No abstract. This is not a gap in this database — OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

The record

Venue
Nature Methods
Topic
RNA and protein synthesis mechanisms
Field
Biochemistry, Genetics and Molecular Biology
Canadian institutions
University of British ColumbiaBC Cancer AgencyCanada's Michael Smith Genome Sciences Centre
Funders
Keywords
ContigSequence assemblySubstringPipeline (software)Computational biologyRNA-SeqTranscriptomeBiologyDe novo transcriptome assemblyRNAGeneticsGeneComputer scienceGenomeGene expressionSet (abstract data type)
Has abstract in OpenAlex
no