Bibliographic record
Abstract
This paper presents an analysis of microarray gene expression data from patients with and without scleroderma skin disease using computational intelligence and visual data mining techniques. Virtual reality spaces are used for providing unsupervised insight about the information content of the original set of genes describing the objects. These spaces are constructed by hybrid optimization algorithms based on a combination of Differential Evolution (DE) and Particle Swarm Optimization respectively, with deterministic Fletcher-Reeves optimization. A distributed-pipelined data mining algorithm composed of clustering and cross-validated rough sets analysis is applied in order to find subsets of relevant attributes with high classification capabilities. Finally, genetic programming (GP) is applied in order to find explicit analytic expressions for the characteristic functions of the scleroderma and the normal classes. The virtual reality spaces associated with the set of function arguments (genes) are also computed. Several small subsets of genes are discovered which are capable of classifying the data with complete accuracy. They represent genes potentially relevant to the understanding of the scleroderma disease.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.007 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.003 | 0.003 |
| Science and technology studies | 0.001 | 0.002 |
| Scholarly communication | 0.005 | 0.003 |
| Open science | 0.002 | 0.003 |
| Research integrity | 0.002 | 0.002 |
| Insufficient payload (model declined to judge) | 0.013 | 0.005 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".