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Record W2117911639 · doi:10.1093/eurheartj/eht272

Statistical genetics with application to population-based study design: a primer for clinicians

2013· review· en· W2117911639 on OpenAlexaff
Joseph Beyene, Guillaume Paré

Bibliographic record

VenueEuropean Heart Journal · 2013
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Associations and Epidemiology
Canadian institutionsHamilton Health SciencesThrombosis and Atherosclerosis Research InstitutePopulation Health Research InstituteMcMaster University
Fundersnot available
KeywordsMedicineIdentification (biology)GenotypingGenomicsGenetic associationPopulationHuman geneticsGenome-wide association studyPrimer (cosmetics)Data scienceComputational biologyGeneticsGenomeGenotypeBiologySingle-nucleotide polymorphismComputer scienceGeneEnvironmental health

Abstract

fetched live from OpenAlex

With the completion of the entire human genome sequence and remarkable advances in genotyping technologies, there has been an increased interest in the application of genetics and genomics in biomedical research over the last decade. Large-scale population-based genetic association studies have now become routine and their application to several multifactorial diseases such as cardiovascular disorders has led to the identification of a number of novel susceptibility genes. However, to be able to interpret results from such studies, clinicians need to have a basic understanding of unique concepts and issues related to this fast-moving area of research. In this primer, we provide a broad overview of design, analysis, and methodological issues with a focus on population-based study design.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.134
metaresearch head score (Gemma)0.166
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.134
Threshold uncertainty score0.711

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1340.166
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0050.002
Bibliometrics0.0060.005
Science and technology studies0.0010.010
Scholarly communication0.0060.008
Open science0.0060.004
Research integrity0.0100.024
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.110
GPT teacher head0.410
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2013
Admission routes1
Has abstractyes

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