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Record W2119161962 · doi:10.1186/1745-6150-4-34

Prokaryotic evolution and the tree of life are two different things

2009· article· en· W2119161962 on OpenAlexafffund
Éric Bapteste, Maureen A. O’Malley, Robert G. Beiko, Marc Ereshefsky, J. Peter Gogarten, L. R. Franklin-Hall, François‐Joseph Lapointe, John Dupré, Tal Dagan, William Martin

Bibliographic record

VenueBiology Direct · 2009
Typearticle
Languageen
FieldPhysics and Astronomy
TopicOrigins and Evolution of Life
Canadian institutionsUniversité de MontréalUniversity of CalgaryDalhousie University
FundersEconomic and Social Research CouncilNatural Sciences and Engineering Research Council of CanadaGenome AtlanticNational Aeronautics and Space AdministrationCanada Research ChairsLeverhulme TrustDeutsche ForschungsgemeinschaftNational Science Foundation
KeywordsTree of life (biology)BiologyTree (set theory)MonismHierarchyEvolutionary biologyMulticellular organismCommon descentPhylogeneticsGenomeConvergent evolutionLineage (genetic)PopulationMacroevolutionMechanism (biology)EcologyPhylogenetic treeEpistemologyGeneticsSociologyGene

Abstract

fetched live from OpenAlex

OpenAlex records an abstract for this work, but it could not be fetched just now.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.007
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.005
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0020.017
Scholarly communication0.0070.011
Open science0.0010.003
Research integrity0.0030.004
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.234
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations227
Published2009
Admission routes2
Has abstractyes

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