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Nanostructures and Thermal Properties of the Binary Mixture of DNA and a Zwitterionic Phospholipid in the Bulk

2012· article· en· W2119401380 on OpenAlexvenueno aff
Ching-Mao Wu

Bibliographic record

VenueJournal of Applied Solution Chemistry and Modeling · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Interference and Gene Delivery
Canadian institutionsnot available
FundersIndustrial Technology Research Institute
KeywordsSmall-angle X-ray scatteringDifferential scanning calorimetryChemistryPhase (matter)Thermotropic crystalDNALipid bilayerAqueous solutionPhospholipidNanostructureMembraneCrystallographyChemical engineeringMaterials scienceScatteringOrganic chemistryNanotechnologyBiochemistryThermodynamics

Abstract

fetched live from OpenAlex

The mixtures of polyanionic DNA and zwitterionic phospholipids (ZL) have recently received much attention because of their potential for use as vectors in gene therapy or as a template for nanostructure construction. The past few studies on DNA-ZL system were carried out in their aqueous solutions and it was reported that a small fraction of DNA was capable of binding to zwitterionic lipids. However, it is still not known whether, as in the aqueous state, the DNA will be still intercalated between lipid bilayers in the bulk state. In the present study, we examined the DNA-ZL interactions in the bulk state by investigating a binary system composing of DNA and a zwitterionic lipid, 1,2-di(cis-9-octadecenoyl)-sn-glycero-3-phosphocholine (DOPC). The nanostructures and thermotropic phase behavior of this system were investigated using small angle X-ray scattering (SAXS) and differential scanning calorimeter (DSC), respectively. Our SAXS with one-dimensional correlation function results revealed that, as in the aqueous state, the DNA/DOPC bulk mixture forms a multilamellar phase, where the DNA was confined between the DOPC lipid bilayers. The thickness of the hydrophobic layers composed of lipids tails was greater in the DNA-DOPC mixture than in the pure DOPC. However, interestingly, the thickness of the hydrophilic layer composed of lipid headgroups in the DNA-DOPC mixture was same as in the pure DOPC even though in the former DNA was intercalated in this layer. Furthermore, according to the DSC endotherms we also observe that DNA induced a significant depression of gel-to-liquid crystalline phase transition temperature of DOPC bilayer. A thermodynamic model was presented that described the experimentally observed morphological and thermotropic phase behavior.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.167

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.218
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2012
Admission routes1
Has abstractyes

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