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Record W2124821564 · doi:10.1093/jac/dkr036

Newer antibacterial agents and their potential role in cystic fibrosis pulmonary exacerbation management--authors' response

2011· article· en· W2124821564 on OpenAlexaff
Michael D. Parkins, J.S. Elborn

Bibliographic record

VenueJournal of Antimicrobial Chemotherapy · 2011
Typearticle
Languageen
FieldMedicine
TopicCystic Fibrosis Research Advances
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsCystic fibrosisExacerbationMedicineAntibacterial agentIntensive care medicineMicrobiologyImmunologyAntibioticsInternal medicineBiology

Abstract

fetched live from OpenAlex

Sir, In response to the comments of Cooreman and Jeurissen1 on our recent article2 we would like to make several clarifications. Although Pseudomonas aeruginosa remains the most commonly isolated pathogen in cystic fibrosis (CF), this pattern is changing. The practice of early eradication of P. aeruginosa with aerosolized antibiotics has become the standard of care.3 In clinics in which this practice has been aggressively adopted, P. aeruginosa prevalence rates have dwindled to <5% in those CF patients <18 years of age.4 Accordingly, CF physicians are increasingly treating pulmonary exacerbations (PEx) caused by pathogens other than P. aeruginosa such as Stenotrophomonas maltophilia, Achromobacter xylosoxidans, Staphylococcus aureus and so on. It is PEx with these pathogens, and not P. aeruginosa, for which we have advocated the use of tigecycline, as clearly indicated in our review. The FDA has recently released a drug safety communication cautioning practitioners on the use of tigecycline in severe infections based on the pooled analysis of 13 trials involving >7000 patients where all-cause mortality was observed to be increased by 0.6% [95% confidence interval (CI) 0.1–1.2] relative to comparator antibiotics.5 However, the FDA did not warn that tigecycline should not be used in pulmonary infections as asserted by Cooreman and Jeurissen.1 Furthermore, community-acquired pneumonia remains an approved indication for the use of tigecycline. Most of the increased mortality in tigecycline-treated patients was attributable to hospital-acquired pneumonia, in particular, ventilator-associated pneumonia (VAP). This observation may not be relevant to CF PEx, a disease for which no antibiotic has an FDA-approved indication. PEx in CF are overwhelmingly caused by chronically colonizing pathogens and not through the new acquisition of pathogens,6,7 and as such the empirical provision of PEx antibacterials based on prior sputum results is commonplace and supported. The bacteriostatic nature of tigecycline, postulated to be a potential detractor in the management of respiratory infections, is not relevant in CF PEx as eradication of chronically infecting pathogens is generally not possible.3 The use of tigecycline in CF has been reported only rarely, but clinical outcomes have been favourable.8 CF-specific pharmacokinetic data for tigecycline (as well as for many antibiotics) continue to be lacking and the lower AUC data observed in patients in tigecycline trials with VAP and associated lower clinical cure rates9 emphasize the importance of understanding the pharmacokinetics of antimicrobials in disease-specific settings. With the increasing burden of multidrug-resistant pathogens in CF and their associated increased risk of mortality,10 new therapeutic options are desperately required. J. S. E. has consulted for Bayer and Gilead. M. D. P. has none to declare.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.014
Threshold uncertainty score0.048

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0120.007
Insufficient payload (model declined to judge)0.0140.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.260
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2011
Admission routes1
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