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Record W2130275384

PHOTO-INDUCED CHARGE FLOW THROUGH CANONICAL DNA/RNA AND NON-CANONICAL DNA CONTAINING TRINUCLEOTIDE REPEATS

2010· dissertation· en· W2130275384 on OpenAlexfundno aff
Kaushiki Sen

Bibliographic record

VenueSummit (Simon Fraser University) · 2010
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA modifications and cancer
Canadian institutionsnot available
FundersSimon Fraser University
KeywordsNon canonicalDNATrinucleotide repeat expansionGeneticsCharge (physics)PhysicsBiologyComputational biologyQuantum mechanicsCell biologyGeneAllele
DOInot available

Abstract

fetched live from OpenAlex

The charge flow technique is used to study structure of nucleic acids. DNA-DNA duplexes and DNA-RNA heteroduplexes have been studied using charge transfer, yet little is known about RNA-RNA duplex conductivity. Both piperidine and aniline treatment on DNA-DNA duplexes with guanine-rich termini generated a large oxidative end-effect. Both DNA-DNA and RNA-RNA duplexes demonstrated similar findings. Sensitivity of the end-effect towards mismatches suggests its utility as sensitive reporter of mismatches. Various diseases are associated with polymorphic DNA trinucleotide repeats (TNR). Disease associated TNRs (CAG, CGG, CCG, CTG) can form alternative DNA structures in vitro with two Watson-Crick base pairs sandwiching single mismatches. Mismatches interrupt base stacking and hence are known to affect duplex conductivity. Charge flow through duplexes carrying TNRs did not show any statistically significant difference in damage. The increase in damage from 10 oC to 21 oC, was not statistically significant. Our approach could not be applied to TNRs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.511
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.240
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2010
Admission routes1
Has abstractyes

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