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Record W2131395947 · doi:10.1534/genetics.108.099812

Testing for Spatially Divergent Selection: Comparing <i>Q</i>ST to <i>F</i>ST

2009· article· en· W2131395947 on OpenAlexaff
Michael C. Whitlock, Frédéric Guillaume

Bibliographic record

VenueGenetics · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsUniversity of British Columbia
FundersSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNational Science Foundation
KeywordsBiologyTraitQuantitative trait locusSelection (genetic algorithm)GeneticsType I and type II errorsEvolutionary biologyNull hypothesisNeutralityStatisticsGeneMathematics

Abstract

fetched live from OpenAlex

Q(ST) is a standardized measure of the genetic differentiation of a quantitative trait among populations. The distribution of Q(ST)'s for neutral traits can be predicted from the F(ST) for neutral marker loci. To test for the neutral differentiation of a quantitative trait among populations, it is necessary to ask whether the Q(ST) of that trait is in the tail of the probability distribution of neutral traits. This neutral distribution can be estimated using the Lewontin-Krakauer distribution and the F(ST) from a relatively small number of marker loci. We develop a simulation method to test whether the Q(ST) of a given trait is consistent with the null hypothesis of selective neutrality over space. The method is most powerful with small mean F(ST), strong selection, and a large number (>10) of measured populations. The power and type I error rate of the new method are far superior to the traditional method of comparing Q(ST) and F(ST).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.023
metaresearch head score (Gemma)0.079
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.023
Threshold uncertainty score0.120

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0230.079
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.002
Science and technology studies0.0010.004
Scholarly communication0.0010.002
Open science0.0020.002
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.258
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations188
Published2009
Admission routes1
Has abstractyes

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