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From iron oxides to infections

2008· review· en· W2134482055 on OpenAlexaboutno aff
D. K. NEWMAN

Bibliographic record

VenueGeobiology · 2008
Typereview
Languageen
FieldEnvironmental Science
TopicMicrobial Fuel Cells and Bioremediation
Canadian institutionsnot available
FundersHoward Hughes Medical Institute
KeywordsGeochemistryGeologyMetallurgyMaterials science

Abstract

fetched live from OpenAlex

I was fortunate to have met Terry Beveridge early during my time in graduate school, when my advisor, Francois Morel (a geochemist), recognized the importance of my having a microbiologist on my PhD advising committee. At the time, I was studying microbial precipitation of arsenic trisulfide (As_2S_3) by Desulfotomaculum auripigmentum and needed the help of a geomicrobiologist to take electron micrographs of my samples (Newman et al., 1997). What better person to ask than Terry Beveridge? Not knowing much about what I was doing, I naively went off to Guelph to spend a week working in Terry’s laboratory during the fall of 1994. Little did I know that this would be the start of one of the most inspirational scientific and personal relationships of my career. From that week forward, I turned to Terry whenever I had a question about microbiology, and looked forward to his responses: Terry had a way of making me feel like I had hit upon something profound (when in fact my questions were pretty trivial), and his answers not only were thoughtful and informed, but had the effect of getting me to think about other problems that were much more interesting.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.005
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.002
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0050.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.269
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2008
Admission routes1
Has abstractyes

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