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Record W2136004163 · doi:10.1111/azo.12006

Character distribution maps: a visualization method for comparative cladistics

2012· article· en· W2136004163 on OpenAlexaff
John A. Whitlock, Jeffrey A. Wilson

Bibliographic record

VenueActa Zoologica · 2012
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicEvolution and Paleontology Studies
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsCladisticsCharacter (mathematics)BiologyPhylogenetic treeVisualizationCharacter evolutionEvolutionary biologySoftwareSimple (philosophy)Data visualizationComputer scienceCladeArtificial intelligenceMathematicsGeneticsProgramming languageEpistemology

Abstract

fetched live from OpenAlex

Abstract The rise of computational methods and widespread availability of phylogenetic software packages has resulted in a dramatic increase in the number of phylogenetic analyses published each year. We anticipate that as the number of workers and the number of analyses continues to increase, interest in so‐called ‘meta‐analyses’ that compare not just the resultant trees, but the data themselves, will also increase. Here, we demonstrate a simple method for authors to facilitate such comparisons by visually representing the character data included in their analyses, the C haracter D istribution M ap ( CDM ).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.691
Threshold uncertainty score0.467

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.080
GPT teacher head0.341
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2012
Admission routes1
Has abstractyes

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