MétaCan
Menu
Back to cohort
Record W2139849788 · doi:10.1371/journal.pgen.1003607

Gene × Physical Activity Interactions in Obesity: Combined Analysis of 111,421 Individuals of European Ancestry

2013· review· en· W2139849788 on OpenAlexaff
Shafqat Ahmad, Gull Rukh, Tibor V. Varga, Ashfaq Ali, Azra Kurbasic, Dmitry Shungin, Ulrika Ericson, Robert W. Koivula, Audrey Y. Chu, Lynda M. Rose, Andrea Ganna, Qibin Qi, Alena Stančáková, Camilla H. Sandholt, Cathy E. Elks, Gary C. Curhan, Majken K. Jensen, Rulla M. Tamimi, Kristine H. Allin, Torben Jørgensen, Søren Brage, Claudia Langenberg, Mette Aadahl, Niels Grarup, Allan Linneberg, Guillaume Paré, Patrik K. E. Magnusson, Nancy L. Pedersen, Michael Boehnke, Anders Hamsten, Karen L. Mohlke, Louis T. Pasquale, Oluf Pedersen, Robert A. Scott, Paul M. Ridker, Erik Ingelsson, Markku Laakso, Torben Hansen, Lu Qi, Nicholas J. Wareham, Daniel I. Chasman, Göran Hallmans, Frank B. Hu, Frida Renström, Marju Orho‐Melander, Paul W. Franks

Bibliographic record

VenuePLoS Genetics · 2013
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNutrition, Genetics, and Disease
Canadian institutionsPopulation Health Research InstituteMcMaster University
FundersNational Institute of Diabetes and Digestive and Kidney DiseasesNational Heart, Lung, and Blood InstituteNational Institutes of HealthMedical Research CouncilWellcome TrustDiabetestutkimussäätiöNovo Nordisk FondenInnovative Medicines InitiativeNational Cancer InstituteKnut och Alice Wallenbergs StiftelseKuopion Yliopistollinen SairaalaCopenhagen Graduate School for Nanoscience and NanotechnologyVetenskapsrådetNational Eye InstituteAcademy of FinlandNovo Nordisk Foundation Center for Basic Metabolic ResearchHjärt-LungfondenNovo NordiskDonald W. Reynolds FoundationLundbeckfondenAmgenLunds UniversitetH. Lundbeck A/SStiftelsen för Strategisk ForskningFondation LeducqEuropean CommissionNational Human Genome Research InstituteEuropean Federation of Pharmaceutical Industries and Associations
KeywordsBiologyObesityGeneticsEvolutionary biologyComputational biologyEndocrinology

Abstract

fetched live from OpenAlex

Numerous obesity loci have been identified using genome-wide association studies. A UK study indicated that physical activity may attenuate the cumulative effect of 12 of these loci, but replication studies are lacking. Therefore, we tested whether the aggregate effect of these loci is diminished in adults of European ancestry reporting high levels of physical activity. Twelve obesity-susceptibility loci were genotyped or imputed in 111,421 participants. A genetic risk score (GRS) was calculated by summing the BMI-associated alleles of each genetic variant. Physical activity was assessed using self-administered questionnaires. Multiplicative interactions between the GRS and physical activity on BMI were tested in linear and logistic regression models in each cohort, with adjustment for age, age(2), sex, study center (for multicenter studies), and the marginal terms for physical activity and the GRS. These results were combined using meta-analysis weighted by cohort sample size. The meta-analysis yielded a statistically significant GRS × physical activity interaction effect estimate (Pinteraction = 0.015). However, a statistically significant interaction effect was only apparent in North American cohorts (n = 39,810, Pinteraction = 0.014 vs. n = 71,611, Pinteraction = 0.275 for Europeans). In secondary analyses, both the FTO rs1121980 (Pinteraction = 0.003) and the SEC16B rs10913469 (Pinteraction = 0.025) variants showed evidence of SNP × physical activity interactions. This meta-analysis of 111,421 individuals provides further support for an interaction between physical activity and a GRS in obesity disposition, although these findings hinge on the inclusion of cohorts from North America, indicating that these results are either population-specific or non-causal.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.009
Threshold uncertainty score0.047

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.007
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0040.015
Bibliometrics0.0020.004
Science and technology studies0.0010.000
Scholarly communication0.0020.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.072
GPT teacher head0.346
Teacher spread0.274 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations184
Published2013
Admission routes1
Has abstractyes

Explore more

Same venuePLoS GeneticsSame topicNutrition, Genetics, and DiseaseFrench-language works237,207