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EVOLUTIONARY GENETICS AND PLEISTOCENE BIOGEOGRAPHY OF NORTH AMERICAN TREE SQUIRRELS (<i>TAMIASCIURUS</i>)

2001· article· en· W2140120905 on OpenAlex
Brian S. Arbogast, Robert A. Browne, Peter D. Weigl

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueJournal of Mammalogy · 2001
Typearticle
Languageen
FieldEnvironmental Science
TopicAnimal Ecology and Behavior Studies
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyEcologyCytochrome bLineage (genetic)Phylogenetic treePhylogeographyRange (aeronautics)BiogeographyEvolutionary biologyZoologyGenetics

Abstract

fetched live from OpenAlex

Nucleotide sequence data from the mitochondrial DNA (mtDNA) cytochrome-b gene and allozymic data were used to infer the evolutionary and biogeographic histories of New World tree squirrels of the genus Tamiasciurus. Phylogenetic analyses of the cytochrome-b data support the existence of 3 mtDNA lineages within Tamiasciurus: a western lineage consisting of populations of T. douglasii from western British Columbia (Canada), Washington, Oregon, and California, and T. mearnsi from northern Baja California (Mexico); a southwestern lineage consisting of populations of T. hudsonicus from New Mexico and Arizona; and a geographically widespread lineage comprising populations of T. hudsonicus from the remainder of the species' range. Levels of mtDNA sequence variation observed within and among populations of Tamiasciurus were small (0–2.4%), suggesting that contemporary geographic patterns of genetic variation in Tamiasciurus have been established relatively recently (i.e., in the Late Pleistocene). Allozyme analyses also support a close relationship among extant populations of Tamiasciurus. No fixed allelic differences were observed among the 3 recognized species and interspecific genetic distances (Nei's D) were substantially less than those typically observed between sibling species. Although differing from the current taxonomy in several respects, geographic patterns of genetic variation observed within Tamiasciurus are similar to those observed in a variety of North American boreal forest taxa and most likely reflect effects of forest fragmentation associated with glacial cycles of the Pleistocene.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.026
Threshold uncertainty score0.375

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.228
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it