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Record W2141381346 · doi:10.1200/jco.2005.04.4420

Unraveling the Mystery of Prognostic and Predictive Factors in Epidermal Growth Factor Receptor Therapy

2006· letter· en· W2141381346 on OpenAlexaff
Frances A. Shepherd, Ming‐Sound Tsao

Bibliographic record

VenueJournal of Clinical Oncology · 2006
Typeletter
Languageen
FieldMedicine
TopicLung Cancer Treatments and Mutations
Canadian institutionsPrincess Margaret Cancer CentreUniversity of Toronto
Fundersnot available
KeywordsMedicineErlotinibEpidermal growth factor receptorGefitinibInternal medicineOncologyExonLung cancerClinical trialRetrospective cohort studyPredictive markerCancerGeneGeneticsBiology

Abstract

fetched live from OpenAlex

TO THEEDITOR: We write in response to the articles of Hirsch et al 1 and Takano et al 2 and the editorial by Johnson and Janne 3 concerning predictive epidermal growth factor receptor (EGFR) markers for sensitivity to tyrosine kinase inhibition in patients with non–small-cell lung cancer. These and other authors have concluded from their analyses of gene copy number and mutational status that the presence of classical exon 19 deletions or exon 21 L858R point mutations and/or increased gene copy number are predictive of a higher response rate in patients with non–small-cell lung cancer. We agree that this is indeed true, although the exceptionally high response rates for mutation-positive patients (sometimes approaching 100%) reported from retrospective analyses of highly selected patients and, frequently, from a single institution are unlikely to be confirmed in larger, prospectively designed, multicenter trials in which patients are less homogeneous and strict response and validation criteria are applied. For example, the response rate for patients with mutations in the trial reported by Hirsch et al 1 was only 50%. 4 Similarly, in the BR.21 trial in which erlotinib was compared with placebo, 5 the response rate was 25% in patients with classical mutations compared with 9% both in the entire study and in patients with novel mutations. 6 Most retrospective analyses of phase II trials of EGFR inhibitors, including those published in the Journal of Clinical Oncology, 1,2 have also reported superior survival for patients with classical mutations and/or increased gene copy number. Furthermore, most authors have either directly or by inference suggested that the superior survival was a direct result of treatment with the EGFR inhibitor, thereby indicating a differential effect of therapy in the subgroup of patients with mutations or high copy number. This would mean that these factors were predictive markers of a greater survival benefit. We maintain that it is inappropriate to draw such conclusions from phase II studies that did not have untreated control arms. There is increasing evidence to suggest that the presence ofEGFR mutations is prognostic. Significantly longer survival has been reported recently for untreated mutation-positive patients from surgical series. 7 In the placebo arm of BR.21, patients with classical mutations demonstrated longer median survival time than patients with wild-type or novelEGFR variants (9.1 v 3.5 and 3.5 months, respectively). This suggests that classical EGFR mutations confer a favorable prognosis and that the superior survival reported for mutation-positive patients from single-arm studies may not have been a result of a greater benefit from the EGFR inhibitor in these patients. In fact, no significantly greater survival benefit was seen in classical or novel mutation-positive patients in BR.21 compared with the survival benefit seen in patients with wild-type EGFR (hazard ratio 0.65, 0.67, and 0.73, respectively). 6 Similar results were reported from a trial of chemotherapy with or without erlotinib in which the survival of patients with mutations was significantly longer than the survival of patients with wild-type tumors (P .001). However, there was no further survival benefit for mutation-positive patients when erlotinib was added to chemotherapy. 8 In contrast, the results of BR.21 gene copy analyses hint at a possible differential effect on survival from erlotinib in patients with high gene copy number compared with patients with low copy number (hazard ratio 0.44 and 0.85, respectively), although theP value for interaction was negative (P .1), and thus, these analyses must be considered exploratory. 6 Prognostic factors are patient and tumor factors that predict patient outcome (usually survival) and are independent of treatment administered. Predictive factors are clinical, cellular, and molecular markers that predict response of the tumor to treatment (either in terms of tumor shrinkage or a survival benefit from treatment). In essence, therefore, prognostic factors define the effects of tumor characteristics on the patient, whereas predictive factors define the effect of treatment on the tumor. Evidence is growing to suggest that EGFR mutations are favorable prognostic markers of survival and that they are predictive markers of response in terms of tumor shrinkage. There is no evidence yet to suggest that they are predictive of a differential effect of EGFR inhibitor therapy on survival. The subgroup of patients with mutations clearly is biologically distinct, but an interaction of this subset with treatment and survival has yet to be demonstrated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesResearch integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.164
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.094
GPT teacher head0.445
Teacher spread0.351 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations106
Published2006
Admission routes1
Has abstractyes

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