Symbiosis-regulated expression of an acetyl-CoA acetyltransferase gene in the ectomycorrhizal fungus <i>Laccaria bicolor</i>
Bibliographic record
Abstract
The ectomycorrhiza is a symbiotic organ generated from the intricate association of fungal hyphae and plant root. The establishment of the ectomycorrhiza is a coordinated process of cross-talk between plant and fungus, followed by metabolic, developmental, and structural changes in the fungus, resulting in its growth toward the root. The initial stages of the symbiotic association are significant, since the direction of the association is determined by the gene expression level shifts that occur at this time. We have isolated a Laccaria bicolor (Maire) Orton cDNA clone corresponding to acetyl-CoA acetyltransferase (Lb-AAT), which is expressed during interaction with red pine roots and is symbiosis regulated. Acetyl-CoA acetyltransferase (EC 2.3.1.9) is an enzyme of the β-oxidation pathway that degrades long-chain fatty acids to acetyl-CoA. Expression of Lb-AAT is regulated by plant presence, by glucose, and by the presence of acetate or oleate in the medium. It is proposed that the role of Lb-AAT in the symbiosis is generation of two carbon compounds from stored lipids and generation of acetoacetyl-CoA in early interaction facilitating net growth from existing cell material. These results coupled with recent microarray analysis that revealed coordinated expression of malate synthase and other lipid metabolism genes along with Lb-AAT, suggest that this role for Lb-AAT could be an important part of preinfection process in ectomycorrhizal symbiosis and in the transfer and utilization of the carbon in the fungus.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".