In-silico analysis predicting the best model for photosystemIID2 Protein of Spinaciaolearacea using multiple templates
Bibliographic record
Abstract
Spinach is a natural medicine against diabetes, prostate cancer, asthma, constipation, high blood pressure. Spinach acts as anti-inflammatory, antiproliferative, antioxidative. In this study the PHOTOSYSTEMII D2 protein has considered for in-silico analysis. Models of the protein were generated using 1IZLD, 3A0B, 3WU2, 4IL6 templates. The sequence retrieved from uniprot, templates were predicted by usingblastP tool, physico-chemical analysis showed the properties of protein using prot-param tool , secondary structure prediction showed helices, turns and sheets using CFFSP server, homologous models were generated using modeller9.12 tool, backbone confirmation was performed by using Rampage server and finally the best model generated by using 3A0B template having 94.0% of residues lying in favored region, 2.0% residues lying in outlier region, with 91% of query coverage and 95% of identity with photosystemQ (B) protein of Thermosynechocuccus vulcanus.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.001 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".