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<scp>aflpop</scp>: a computer program for simulated and real population allocation, based on AFLP data

2002· article· en· W2144025801 on OpenAlexafffund
Pierre Duchesne, Louis Bernatchez

Bibliographic record

VenueMolecular Ecology Notes · 2002
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsUniversité Laval
FundersNatural Sciences and Engineering Research Council of CanadaCanada Research Chairs
KeywordsPopulationComputer scienceAmplified fragment length polymorphismSelection (genetic algorithm)StatisticsSample (material)GenotypeBiologyArtificial intelligenceGeneticsMathematicsDemography

Abstract

fetched live from OpenAlex

Abstract aflpop is a population allocation and simulator program based on amplified fragment length polymorphism markers. The allocation method is an adaptation of Paetkau's method for co‐dominant alleles. Besides population allocation of specimens of unknown origin, re‐allocation of sample genotypes, as well as allocation of artificial (Monte Carlo) specimens, may be run to estimate expected rates of correct allocations. Thanks to its embodied simulator, aflpop can provide information on the rates and types of incorrect allocations and on empirical distributions of likelihood statistics. A filtering procedure within aflpop allows the selection of loci according to user‐defined criteria.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Software · Consensus signal: none
Teacher disagreement score0.088
Threshold uncertainty score0.294

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.004
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.002
Open science0.0030.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0880.018

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.264
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations195
Published2002
Admission routes2
Has abstractyes

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