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Record W2146143888 · doi:10.1109/iembs.2009.5333761

Microarray image segmentation using chan-vese active contour model and level set method

2009· article· en· W2146143888 on OpenAlexafffund
Kaustubha Mendhurwar, Rajasekhar Kakumani, V. Devabhaktuni

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene expression and cancer classification
Canadian institutionsConcordia University
FundersConcordia University
KeywordsImage segmentationArtificial intelligenceSegmentationComputer scienceScale-space segmentationSegmentation-based object categorizationPattern recognition (psychology)Microarray analysis techniquesImage (mathematics)Active contour modelLevel set (data structures)Gene chip analysisComputer visionSet (abstract data type)MicroarrayGene expressionGeneBiology

Abstract

fetched live from OpenAlex

Microarray technology is considered to be one of the major breakthroughs in bioinformatics for profiling gene-expressions of thousands of genes, simultaneously. Analysis of a microarray image plays an important role in the accurate depiction of gene-expression. Segmentation, the process of separating the foreground from the background, of a microarray image, is one of the key issues in microarray image analysis. Level sets have tremendous potential in the segmentation of images. In this paper, a new approach for segmentation of the microarray images is proposed. In this work, Chan-Vese approximation of the Mumford-Shah model and the level set method are employed for image segmentation. Illustrative examples of the proposed method are presented highlighting its effectiveness.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.442
Threshold uncertainty score0.360

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.363
Teacher spread0.303 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2009
Admission routes2
Has abstractyes

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