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Record W2146390784 · doi:10.1002/hep.28258

GNPAT variant is not associated with severe iron overload in Irish C282Y homozygotes

2015· letter· en· W2146390784 on OpenAlexaboutno aff
Eleanor Ryan, Jennifer Russell, John Ryan, John Crowe, Stephen Stewart

Bibliographic record

VenueHepatology · 2015
Typeletter
Languageen
FieldMedicine
TopicIron Metabolism and Disorders
Canadian institutionsnot available
Fundersnot available
KeywordsInterquartile rangeFerritinAlleleGastroenterologyInternal medicineMedicineAllele frequencyPopulationPolymorphism (computer science)HemochromatosisCohortGeneticsBiologyGene

Abstract

fetched live from OpenAlex

Potential conflict of interest: Nothing to report. Author names in bold denote shared co‐first authorship. To the Editor: Following the recent publication by McLaren et al. whereby the rs11558492 polymorphism in the GNPAT gene (p.D519G) was demonstrated to be a modifier of the hereditary hemochromatosis (HH) phenotype in a cohort of male C282Y homozygotes, we sought to examine this polymorphism in the Irish HH population.1 We looked at the polymorphism in our C282Y homozygous HH population as a whole (n = 263), in males only (n = 177), and in males categorized according to a serum ferritin value at diagnosis of (1) ≥1000 μg/L (n = 57, median serum ferritin 1650 μg/L, interquartile range 1196‐1947 μg/L) and (2) <1000 μg/L (n = 100, median serum ferritin 558 μg/L, interquartile range 420‐810 μg/L). Allele frequencies of GNPAT p.D519G were similar across all groups (chi‐squared test, P = 0.632). The allele frequency of GNPAT p.519G was 24.5% for the whole population and 23.7% for males only, in agreement with frequencies reported in 35 male C282Y homozygotes resident in the United States, Canada, and Australia (24.3%) and in 274 French male C282Y homozygotes (26.3%).1 Independent t tests did not demonstrate a significant difference in the allele frequency of p.D519G or mean age in males with a diagnostic serum ferritin of ≥1000 μg compared to those with a diagnostic serum ferritin of <1000 μg/L, 19.3% versus 25.5% (P = 0.593), and mean age 50 ± 10 years versus 47 ± 13 years (P = 0.094), respectively. The allele frequency of 19.3% in those with a diagnostic serum ferritin of ≥1000 μg/L contrasts with that reported by McLaren et al. of 38.6% in a cohort comprising 22 males with a diagnostic serum ferritin of >1000 μg/L.1 Excess alcohol intake was noted in nine individuals (two of whom had serum ferritin ≥1000 μg/L), and when these were removed from the analysis on the whole population, the p.D519G allele frequency was 24.2% The relationship between diagnostic serum ferritin and the GNPAT p.D519G variant was examined using Pearson product‐moment correlation coefficient analysis. Correlation analysis failed to demonstrate any association between the presence of GNPAT p.D519G and diagnostic serum ferritin across all cohorts. In summary, our data show that GNPAT p.D519G is not associated with a high iron phenotype (diagnostic serum ferritin ≥1000 μg/L) in Irish C282Y homozygotes. Thus, our data disagree with the findings of McLaren et al.1 but agree with the findings of Bardou‐Jacquet et al.2 and indeed De Tayrac et al.,3 who did not find the rs11558492 polymorphism to be a significant genetic modifier of the C282Y HH phenotype in a genome‐wide association study. Further studies are warranted in order to clarify the role of the GNPAT p.D519G variant as a modifier of the HH phenotype.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.184
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.259
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2015
Admission routes1
Has abstractyes

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