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Record W2146538166 · doi:10.1016/j.ijid.2012.12.018

A probable food-borne outbreak of pharyngitis after a massive rainstorm in Beijing, caused by emm89 group A Streptococcus rarely found in China

2013· letter· en· W2146538166 on OpenAlexaboutno aff
Peng Yang, Xiaomin Peng, Junyong Yang, Xiaogen Dong, Man Zhang, Quanyi Wang

Bibliographic record

VenueInternational Journal of Infectious Diseases · 2013
Typeletter
Languageen
FieldMedicine
TopicStreptococcal Infections and Treatments
Canadian institutionsnot available
Fundersnot available
KeywordsOutbreakPharyngitisBeijingMedicineCrewAttack rateEnvironmental healthChinaVeterinary medicineGeographyVirologyInternal medicine

Abstract

fetched live from OpenAlex

On July 28, 2012, it was reported that over 20 members of staff of a film crew with pharyngitis visited a hospital in Beijing, China. We conducted a rapid investigation of this outbreak. From July 8, 2012, this film crew with 140 members of staff settled in a town, Beijing to make a film. Their accommodation and food were provided by local vendors. On July 21, the area where the film crew was located was hit by an unprecedented massive rainstorm in Beijing, and the provision of domestic water was compromised. Twenty-eight pharyngitis cases were identified in this outbreak, and the attack rate was 20% (28/140). The date of illness onset of the 28 cases was between midday of July 26 and midday of July 27. Eight group A Streptococcus (GAS) isolates were recovered from pharyngeal swabs of 15 cases. All the isolates belonged to emm89 by emm typing, with resistance to erythromycin, clindamycin, and tetracycline. The onset of illness for the cases in this GAS pharyngitis outbreak fell within a 24-h period and there were no secondary cases in the following 7 days even though no isolation measures were taken and shooting of the film continued, which suggested that this outbreak might have derived from a common-source exposure. As a rainstorm preceding the outbreak influenced the provision of domestic water in the area where the film crew were resident, the probability of contamination of their food was increased. Therefore, we presumed that this might be a food-borne outbreak. Food-borne outbreaks of GAS pharyngitis have been reported in many countries,1Levy M. Johnson C.G. Kraa E. Tonsillopharyngitis caused by foodborne group A Streptococcus: a prison-based outbreak.Clin Infect Dis. 2003; 36: 175-182Crossref PubMed Scopus (26) Google Scholar, 2Ertugrul B.M. Erol N. Emek M. Ozturk B. Saylak O.M. Cetin K. Sakarya S. Food-borne tonsillopharyngitis outbreak in a hospital cafeteria.Infection. 2012; 40: 49-55Crossref PubMed Scopus (4) Google Scholar but not in China. This outbreak was caused by emm89 GAS, rarely found in China.3Chen M. Yao W. Wang X. Li Y. Chen M. Wang G. et al.Outbreak of scarlet fever associated with emm12 type group A Streptococcus in 2011 in Shanghai, China.Pediatr Infect Dis J. 2012; 31: e158-e162Crossref PubMed Scopus (38) Google Scholar, 4Liang Y. Liu X. Chang H. Ji L. Huang G. Fu Z. et al.Epidemiological and molecular characteristics of clinical isolates of Streptococcus pyogenes collected between 2005 and 2008 from Chinese children.J Med Microbiol. 2012; 61: 975-983Crossref PubMed Scopus (43) Google Scholar, 5Jing H.B. Ning B.A. Hao H.J. Zheng Y.L. Chang D. Jiang W. Jiang Y.Q. Epidemiological analysis of group A streptococci recovered from patients in China.J Med Microbiol. 2006; 55: 1101-1107Crossref PubMed Scopus (39) Google Scholar However, emm89 GAS has been one of the most predominant emm types in invasive GAS infections in European countries,6Darenberg J. Luca-Harari B. Jasir A. Sandgren A. Pettersson H. Schalen C. et al.Molecular and clinical characteristics of invasive group A streptococcal infection in Sweden.Clin Infect Dis. 2007; 45: 450-458Crossref PubMed Scopus (146) Google Scholar, 7Plainvert C. Doloy A. Loubinoux J. et al.Invasive group A streptococcal infections in adults, France (2006–2010).Clin Microbiol Infect. 2012; 18: 702-710Crossref PubMed Scopus (72) Google Scholar and a marked expansion of emm89 strains has occurred in Canada.8Shea P.R. Ewbank A.L. Gonzalez-Lugo J.H. Martagon-Rosado A.J. Martinez-Gutierrez J.C. Rehman H.A. et al.Group A Streptococcus emm gene types in pharyngeal isolates, Ontario, Canada, 2002–2010.Emerg Infect Dis. 2011; 17: 2010-2017Crossref PubMed Scopus (58) Google Scholar All emm89 isolates in this study were resistant to erythromycin, clindamycin, and tetracycline, which is rare in other countries.7Plainvert C. Doloy A. Loubinoux J. et al.Invasive group A streptococcal infections in adults, France (2006–2010).Clin Microbiol Infect. 2012; 18: 702-710Crossref PubMed Scopus (72) Google Scholar, 9Rivera A. Rebollo M. Miro E. Mateo M. Navarro F. Gurgui M. et al.Superantigen gene profile, emm type and antibiotic resistance genes among group A streptococcal isolates from Barcelona, Spain.J Med Microbiol. 2006; 55: 1115-1123Crossref PubMed Scopus (58) Google Scholar This is the first probable food-borne outbreak of GAS pharyngitis reported in China. Given the possible role of the rainstorm in this outbreak, it is suggested that not only enteric diseases, but respiratory diseases should be closely monitored after a rainstorm. In light of the circulation of emm89 GAS in many countries and this outbreak being caused by emm89, ongoing surveillance of emm89 GAS is warranted in China, and changes to water purification and food preparation should be considered after a rainstorm. Supported by grants from the Beijing Nova Program of Beijing Science and Technology Commission (2011047) and National Key Program for Infectious Disease of China (2012ZX10004215-003-001). Ethical approval: This study was approved by the Institutional Review Board and Human Research Ethics Committee of Beijing Center for Disease Prevention and Control. Conflict of interest: No conflict of interest to declare.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.048

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.261
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations7
Published2013
Admission routes1
Has abstractyes

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