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Record W2148747107 · doi:10.1139/b06-116

Stochastic approaches in phyllotaxis

2006· article· en· W2148747107 on OpenAlexaffvenue
Denis Barabé

Bibliographic record

VenueCanadian Journal of Botany · 2006
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Molecular Biology Research
Canadian institutionsEspace pour la vie
Fundersnot available
KeywordsPhyllotaxisProbabilistic logicMeristemAntirrhinumMathematicsComputer scienceStatistical physicsBotanyArtificial intelligenceArabidopsisBiologyPhysics

Abstract

fetched live from OpenAlex

Theoretical models of phyllotaxis are based on geometric regularities appearing at the level of the shoot apical meristem (SAM). However, one cannot forget the presence of perturbed patterns in many plants. Disorganized patterns found in mutants of Arabidopsis and Antirrhinum bring new theoretical problems that cannot be solved by using models developed to analyse regular phyllotactic patterns. One way to take into account the perturbed patterns is to use a probabilistic approach to phyllotaxis. This review will focus mainly on recent probabilistic approaches that can be used to analyse perturbed patterns found in the plant kingdom in general and in phyllotactic mutants in particular. More precisely, it will be shown how probabilistic approaches can be used to determine the degree of order of phyllotactic patterns. By using particular tests, it is possible to statistically differentiate between whorled and distichous patterns (aggregated dispersion), spiral patterns (uniform dispersion), and random patterns (random dispersion). The elaboration of a general probabilistic model of phyllotaxis represents a new challenge for both theoretical and experimental research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.007
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.001
Science and technology studies0.0010.003
Scholarly communication0.0020.003
Open science0.0020.002
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.202
Teacher spread0.169 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2006
Admission routes2
Has abstractyes

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