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Record W2151647131 · doi:10.2337/db12-1692

Identification of <i>HKDC1</i> and <i>BACE2</i> as Genes Influencing Glycemic Traits During Pregnancy Through Genome-Wide Association Studies

2013· article· en· W2151647131 on OpenAlexafffund
M. Geoffrey Hayes, Margrit Urbanek, Marie‐France Hivert, Loren L. Armstrong, Jean Morrison, Cong Guo, Lynn P. Lowe, Douglas A. Scheftner, Anna Pluzhnikov, David Levine, Caitlin McHugh, C. Ackerman, Luigi Bouchard, Diane Brisson, Brian T. Layden, Daniel B. Mirel, Kimberly F. Doheny, Marysa Leya, Rachel N. Lown-Hecht, Alan R. Dyer, Boyd E. Metzger, Timothy E. Reddy, Nancy J. Cox, William L. Lowe

Bibliographic record

VenueDiabetes · 2013
Typearticle
Languageen
FieldMedicine
TopicGestational Diabetes Research and Management
Canadian institutionsCégep de ChicoutimiUniversité de Sherbrooke
FundersInstitute of Nutrition, Metabolism and DiabetesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Human Genome Research InstituteEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentU.S. Public Health ServiceU.S. Department of Veterans AffairsNational Cancer InstituteNational Institutes of HealthAmerican Diabetes Association
KeywordsOffspringPregnancyGestational diabetesGenome-wide association studyBiologyGenetic associationGestationDiabetes mellitusGeneGeneticsPhysiologyEndocrinologyMedicineInternal medicineSingle-nucleotide polymorphismGenotype

Abstract

fetched live from OpenAlex

Maternal metabolism during pregnancy impacts the developing fetus, affecting offspring birth weight and adiposity. This has important implications for metabolic health later in life (e.g., offspring of mothers with pre-existing or gestational diabetes mellitus have an increased risk of metabolic disorders in childhood). To identify genetic loci associated with measures of maternal metabolism obtained during an oral glucose tolerance test at ∼28 weeks' gestation, we performed a genome-wide association study of 4,437 pregnant mothers of European (n = 1,367), Thai (n = 1,178), Afro-Caribbean (n = 1,075), and Hispanic (n = 817) ancestry, along with replication of top signals in three additional European ancestry cohorts. In addition to identifying associations with genes previously implicated with measures of glucose metabolism in nonpregnant populations, we identified two novel genome-wide significant associations: 2-h plasma glucose and HKDC1, and fasting C-peptide and BACE2. These results suggest that the genetic architecture underlying glucose metabolism may differ, in part, in pregnancy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.273
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations154
Published2013
Admission routes2
Has abstractyes

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