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Record W2155613296 · doi:10.3201/eid1808.111268

Outbreak of Extended-Spectrum β-Lactamase–producing<i>Klebsiella oxytoca</i>Infections Associated with Contaminated Handwashing Sinks1

2012· article· en· W2155613296 on OpenAlexaffabout
Christopher F. Lowe, Barbara Willey, Anna O’Shaughnessy, Wayne Lee, Ming Lum, Karen Pike, Cindy Larocque, Helen Dedier, Lorraine Dales, Christine Moore, Allison McGeer

Bibliographic record

VenueEmerging infectious diseases · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAntibiotic Resistance in Bacteria
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsKlebsiella oxytocaOutbreakMicrobiologyKlebsiella pneumoniaeKlebsiellaMedicineBeta-lactamaseVirologyBiologyEscherichia coli

Abstract

fetched live from OpenAlex

Klebsiella oxytoca is primarily a health care-associated pathogen acquired from environmental sources.During October 2006-March 2011, a total of 66 patients in a hospital in Toronto, Ontario, Canada, acquired class A extendedspectrum β-lactamase-producing K. oxytoca with 1 of 2 related pulsed-fi eld gel electrophoresis patterns.New cases continued to occur despite reinforcement of infection control practices, prevalence screening, and contact precautions for colonized/infected patients.Cultures from handwashing sinks in the intensive care unit yielded K. oxytoca with identical pulsed-fi eld gel electrophoresis patterns to cultures from the clinical cases.No infections occurred after implementation of sink cleaning 3×/day, sink drain modifi cations, and an antimicrobial stewardship program.In contrast, a cluster of 4 patients infected with K. oxytoca in a geographically distant medical ward without contaminated sinks was contained with implementation of active screening and contact precautions.Sinks should be considered potential reservoirs for clusters of infection caused by K. oxytoca.K lebsiella oxytoca is an opportunistic pathogen that causes primarily hospital-acquired infections, most often involving immunocompromised patients or those requiring intensive care.Reported outbreaks have most frequently involved environmental sources (1-4).K. oxytoca, like other Enterobacteriaceae, may acquire extended-spectrum β-lactamases (ESBL) and carbapenemases (1,5); outbreaks of multidrug-resistant K. oxytoca infection pose an increasing risk to hospitalized patients.We report an outbreak of infections caused by ESBLproducing K. oxytoca in the intensive care unit (ICU), stepdown unit, and medical care unit at a hospital in Toronto, Ontario, Canada, during a 4-year period.Contributing to the ongoing diffi culties in the containment of this outbreak has been the contamination of handwashing sinks in the ICU.We describe a retrospective review of all K. oxytoca isolates intermediate or resistant to third-generation cephalosporins identifi ed from inpatients from April 1997 through December 2011, the investigation of the source of the K. oxytoca outbreak, and the interventions implemented to contain the outbreak. MethodsThe outbreak occurred at an acute tertiary-care facility in Toronto with 472 beds, including a 16 single-bed medical-surgical ICU, a 6-bed cardiac care unit , and two 4-bed step-down units.Outbreak cases of K. oxytoca were defi ned as hospital-acquired isolates with pulsed-fi eld gel electrophoresis (PFGE) patterns belonging to 2 related clonal groups; all such isolates produced an Ambler class A ESBL. Isolates were considered hospital acquired if the fi rst specimen (clinical culture or rectal swab) yielding resistant K. oxytoca was obtained >3 days after the admission date or if the specimen was obtained <3 days after admis- Outbreak of Extended-Spectrum β-Lactamase-producing Klebsiella oxytoca Infections Associated with Contaminated Handwashing Sinks

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Case report · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.128
Threshold uncertainty score0.255

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0020.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.231
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designCase report
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations178
Published2012
Admission routes2
Has abstractyes

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