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Record W2157606277 · doi:10.5376/cmb.2014.04.0008

In-silico molecular analysis of rabies virus across regions

2014· article· en· W2157606277 on OpenAlex
Musa Azara, Abdulmojeed Yakubu

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueComputational Molecular Biology · 2014
Typearticle
Languageen
FieldImmunology and Microbiology
TopicRabies epidemiology and control
Canadian institutionsnot available
Fundersnot available
KeywordsIn silicoRabies virusRabiesVirologyBiologyComputational biologyLyssavirusRhabdoviridaeVirusGeneticsGene

Abstract

fetched live from OpenAlex

Rabies is a preventable viral disease of mammals most often transmitted through the bite of a rabid animal. Almost all human deaths caused by rabies occur in Asia and Africa. There are approximately 55000 human deaths annually from rabies worldwide. The disease affects domestic and wild animals and is spread to people through close contact with infected materials usually saliva via bites and scratches. The objective of this study wasi to determine the phylogenic structure of rabies viruses across species and geographical locations. A total of 22 Rabies virus sequences from 5 species (Dog, Cat, Cow, Wolf and Fox) across 8 locations (Nigeria, India, Ghana, Pakistan, Niger, Brazil, Argentina and Texas) were obtained from the GenBank. A Neighbor-joining tree on the basis of genetic distances depicting phylogenetic relationship among Rabies viruses was constructed using the complete deletion and p-distance option using the MEGA VERSION 5 SOFTWARE. The phylogenic analysis revealeds a strong subdivision of rabies viruses by geographical location. The phylogenic groups also formed clusters associated with species from which the virus is isolated.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.335
Threshold uncertainty score0.763

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.304
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it