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Methanotrophy in Extreme Environments

2009· other· en· W2158103151 on OpenAlexaff
Peter F. Dunfield

Bibliographic record

VenueEncyclopedia of Life Sciences · 2009
Typeother
Languageen
FieldEnvironmental Science
TopicMethane Hydrates and Related Phenomena
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsExtreme environmentExtremophilePsychrophileArchaeaHalophileThermophileEcologyAerobic bacteriaBiogeochemical cycleBiologyMethaneAnaerobic oxidation of methaneBacteriaEnvironmental chemistryChemistryPaleontology

Abstract

fetched live from OpenAlex

Abstract Methanotrophy is the ability of a few prokaryotes to grow on methane as a sole energy source. Aerobic methanotrophic bacteria are active in natural environments with pH values ranging from 1 to 11, temperatures ranging from 0 to 72°C and salinities up to 30%. In addition, anaerobic methanotrophs are found in permanently cold ocean sediments at temperatures down to −1°C, and in geothermally heated sediments at temperatures up to 90°C. Several extremophilic species of aerobic methanotrophs have been isolated and studied in pure culture, including thermophiles, psychrophiles, acidophiles, alkaliphiles and halophiles. The knowledge of methanotrophs and their ecology in extreme environments is summarized, with particular attention on bacteria with multiple extremophilic phenotypes that are found in acidic subarctic peatlands and in acidic geothermal springs. Key concepts Methane is oxidized by prokaryotes in diverse environments, including some with extreme temperatures, pH values and salinities. The ecology of extremophilic methanotrophs has been studied using cultivation‐independent molecular methods. Extremophilic aerobic methanotrophs have been isolated and studied in pure culture, but anaerobic methanotrophs have not yet been isolated. Some aerobic methanotrophs combine multiple extremophilic phenotypes. Biogeochemical and molecular ecology studies suggest that sulphate‐reducing methanotrophs are capable of living under a similar range of temperatures as are aerobic methanotrophs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.129
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0210.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.231
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations27
Published2009
Admission routes1
Has abstractyes

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