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Characterization and varied expression of a membrane‐bound endo‐β‐1,4‐glucanase in hybrid poplar

2010· article· en· W2165267802 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenuePlant Biotechnology Journal · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPolysaccharides and Plant Cell Walls
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsCelluloseXylemBiologyHemicelluloseUltrastructureXyloseXyloglucanCell wallGlucanaseBiochemistrySucroseGeneBotanyCell biology

Abstract

fetched live from OpenAlex

To understand better the intricacies of secondary cell wall biosynthesis in trees, we investigated changes in cellulose chemistry and ultrastructure manifested by the mis-regulation of the poplar membrane-bound beta-1,4-endoglucanase orthologous to KORRIGAN (AtKOR). We isolated the poplar KORRIGAN gene from hybrid poplar (Populus albaxgrandidentata; designated PaxgKOR) and created a self-complementary (hairpin) RNAi suppression construct using PCR products derived from the gene. Additionally, AtKOR was employed to generate transgenic poplar over-expressing KORRIGAN. It was found that down-regulation leads to moderate to severe defects in plant growth, an irregular xylem (irx) phenotype, and significantly impacts the ultrastructure of the cellulose synthesized. The RNAi-suppressed lines deposited significantly reduced quantities of a more highly crystalline cellulose, while the hemicellulose content and, more specifically, the xylose content increased. In addition, the amount of soluble sucrose in the leaves and xylem decreased. Conversely, the AtKOR transgenics did not significantly alter cell wall development or plant growth parameters, but it did impact the ultrastructure of the cellulose produced, generating trees with less crystalline cellulose and reduced xylose content.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.015
Threshold uncertainty score0.243

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.179
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it