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Record W2168284908 · doi:10.14778/2757807.2757808

ALID

2015· article· en· W2168284908 on OpenAlexaff
Lingyang Chu, Shuhui Wang, Siyuan Liu, Qingming Huang, Jian Pei

Bibliographic record

VenueProceedings of the VLDB Endowment · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
Topicvaccines and immunoinformatics approaches
Canadian institutionsSimon Fraser University
FundersNational Key Research and Development Program of ChinaNational Natural Science Foundation of ChinaNational Science Foundation
KeywordsSpeedupScalabilityComputer scienceParameterized complexityTime complexityGraphTheoretical computer scienceAlgorithmParallel computing

Abstract

fetched live from OpenAlex

Detecting dominant clusters is important in many analytic applications. The state-of-the-art methods find dense subgraphs on the affinity graph as dominant clusters. However, the time and space complexities of those methods are dominated by the construction of affinity graph, which is quadratic with respect to the number of data points, and thus are impractical on large data sets. To tackle the challenge, in this paper, we apply Evolutionary Game Theory (EGT) and develop a scalable algorithm, Approximate Localized Infection Immunization Dynamics (ALID). The major idea is to perform Localized Infection Immunization Dynamics (LID) to find dense subgraphs within local ranges of the affinity graph. LID is further scaled up with guaranteed high efficiency and detection quality by an estimated Region of Interest (ROI) and a Candidate Infective Vertex Search method (CIVS). ALID only constructs small local affinity graphs and has time complexity O ( C ( a * + δ ) n ) and space complexity O ( a * ( a * + δ )), where a * is the size of the largest dominant cluster, and C « n and δ « n are small constants. We demonstrate by extensive experiments on both synthetic data and real world data that ALID achieves the state-of-the-art detection quality with much lower time and space cost on single machine. We also demonstrate the encouraging parallelization performance of ALID by implementing the Parallel ALID (PALID) on Apache Spark. PALID processes 50 million SIFT data points in 2.29 hours, achieving a speedup ratio of 7.51 with 8 executors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.862
Threshold uncertainty score0.000

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0040.004
Open science0.0050.005
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.1380.115

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.226
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2015
Admission routes1
Has abstractyes

Explore more

Same venueProceedings of the VLDB EndowmentSame topicvaccines and immunoinformatics approachesFrench-language works237,207