The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome
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Bibliographic record
Abstract
The tau protein is central to the etiology of several neurodegenerative diseases, including Alzheimer's disease, a subset of frontotemporal dementias, progressive supranuclear palsy and dementia following traumatic brain injury, yet the proteins it interacts with have not been studied using a systematic discovery approach. Here we employed mild in vivo crosslinking, isobaric labeling, and tandem mass spectrometry to characterize molecular interactions of human tau in a neuroblastoma cell model. The study revealed a robust association of tau with the ribonucleoproteome, including major protein complexes involved in RNA processing and translation, and documented binding of tau to several heat shock proteins, the proteasome and microtubule-associated proteins. Follow-up experiments determined the relative contribution of cellular RNA to the tau interactome and mapped interactions to N- or C-terminal tau domains. We further document that expression of P301L mutant tau disrupts interactions of the C-terminal half of tau with heat shock proteins and the proteasome. The data are consistent with a model whereby a higher propensity of P301L mutant tau to aggregate may reflect a perturbation of its chaperone-assisted stabilization and proteasome-dependent degradation. Finally, using a global proteomics approach, we show that heterologous expression of a tau construct that lacks the C-terminal domain, including the microtubule binding domain, does not cause a discernible shift of the proteome except for a significant direct correlation of steady-state levels of tau and cystatin B. The tau protein is central to the etiology of several neurodegenerative diseases, including Alzheimer's disease, a subset of frontotemporal dementias, progressive supranuclear palsy and dementia following traumatic brain injury, yet the proteins it interacts with have not been studied using a systematic discovery approach. Here we employed mild in vivo crosslinking, isobaric labeling, and tandem mass spectrometry to characterize molecular interactions of human tau in a neuroblastoma cell model. The study revealed a robust association of tau with the ribonucleoproteome, including major protein complexes involved in RNA processing and translation, and documented binding of tau to several heat shock proteins, the proteasome and microtubule-associated proteins. Follow-up experiments determined the relative contribution of cellular RNA to the tau interactome and mapped interactions to N- or C-terminal tau domains. We further document that expression of P301L mutant tau disrupts interactions of the C-terminal half of tau with heat shock proteins and the proteasome. The data are consistent with a model whereby a higher propensity of P301L mutant tau to aggregate may reflect a perturbation of its chaperone-assisted stabilization and proteasome-dependent degradation. Finally, using a global proteomics approach, we show that heterologous expression of a tau construct that lacks the C-terminal domain, including the microtubule binding domain, does not cause a discernible shift of the proteome except for a significant direct correlation of steady-state levels of tau and cystatin B. The tau protein is a member of the family of microtubule-associated proteins (MAPs)1 that in humans is coded by the MAPT gene on chromosome 17q21.31 (1.Neve R.L. Harris P. Kosik K.S. Kurnit D.M. Donlon T.A. Identification of cDNA clones for the human microtubule-associated protein tau and chromosomal localization of the genes for tau and microtubule-associated protein 2.Brain Res. 1986; 387: 271-280Crossref PubMed Scopus (430) Google Scholar). Initially, described as a factor that binds to and stabilizes microtubules (MTs) (2.Weingarten M.D. Lockwood A.H. Hwo S.Y. Kirschner M.W. A protein factor essential for microtubule assembly.Proc. Natl. Acad. Sci. U.S.A. 1975; 72: 1858-1862Crossref PubMed Scopus (2207) Google Scholar), interest in the tau protein grew when it was shown to represent the main constituent of intracellular protein aggregates, termed neurofibrillary tangles (NFTs), observed in Alzheimer's disease (3.Grundke-Iqbal I. Iqbal K. Quinlan M. Tung Y.C. Zaidi M.S. Wisniewski H.M. Microtubule-associated protein tau. A component of Alzheimer paired helical filaments.J. Biol. Chem. 1986; 261: 6084-6089Abstract Full Text PDF PubMed Google Scholar, 4.Wolozin B.L. Pruchnicki A. Dickson D.W. Davies P. A neuronal antigen in the brains of Alzheimer patients.Science. 1986; 232: 648-650Crossref PubMed Scopus (508) Google Scholar). Similar tau aggregates have since been described in other, less common dementias, including progressive supranuclear palsy (PSP), corticobasal degeneration (CBD), Pick's disease and dementia pugilistica, a form of dementia observed in athletes who had been exposed to repeated traumatic brain injury (5.Lee V.M. Goedert M. Trojanowski J.Q. Neurodegenerative tauopathies.Annu. Rev. Neurosci. 2001; 24: 1121-1159Crossref PubMed Scopus (2140) Google Scholar). Despite its early recognition as a MT binding molecule, the physiological function of the tau protein is still being debated (6.Morris M. Maeda S. Vossel K. Mucke L. The many faces of tau.Neuron. 2011; 70: 410-426Abstract Full Text Full Text PDF PubMed Scopus (640) Google Scholar). At least, in part, this uncertainty is born from the observation that tau knockout mice are rather nonconspicuous in their phenotype (7.Harada A. Oguchi K. Okabe S. Kuno J. Terada S. Ohshima T. Sato-Yoshitake R. Takei Y. Noda T. Hirokawa N. Altered microtubule organization in small-calibe axons of mice lacking tau protein.Nature. 1994; 369: 488-491Crossref PubMed Scopus (589) Google Scholar, 8.Dawson H.N. Ferreira A. Eyster M.V. Ghoshal N. Binder L.I. Vitek M.P. Inhibition of neuronal maturation in primary hippocampal neurons from tau deficient mice.J. Cell Sci. 2001; 114: 1179-1187Crossref PubMed Google Scholar). Ongoing attempts to define additional roles for this protein have, over the years, generated several hypotheses, including that the tau protein modulates neurite outgrowth and axonogenesis H.N. Ferreira A. Eyster M.V. Ghoshal N. Binder L.I. Vitek M.P. Inhibition of neuronal maturation in primary hippocampal neurons from tau deficient mice.J. Cell Sci. 2001; 114: 1179-1187Crossref PubMed Google Scholar, R. J. of tau with the by Cell Biol. PubMed Scopus Google Scholar), the microtubule and J. and tau protein interactions and the study of their PubMed Scopus Google Scholar), and as a for the family to complexes M. A. J. A. M. J. function of tau in Alzheimer's disease Full Text Full Text PDF PubMed Scopus Google Scholar). The expression of tau in neuronal axons a in brain in a to with tau protein the tau protein is observed to from microtubules and to form is from a of with that the cellular observed in the on the of the tau protein J. and tau a in Alzheimer's Rev. Neurosci. 2011; PubMed Scopus Google Scholar). it that the cellular observed in and does not to a of function of the tau protein a of function the protein in its The tau a and a N. Y. Okabe S. the molecular and of binding on Cell Biol. PubMed Scopus Google Scholar). The protein been to including to and heat that cause a of proteins to (2.Weingarten M.D. Lockwood A.H. Hwo S.Y. Kirschner M.W. A protein factor essential for microtubule assembly.Proc. Natl. Acad. Sci. U.S.A. 1975; 72: 1858-1862Crossref PubMed Scopus (2207) Google Scholar, D.W. Hwo S.Y. Kirschner M.W. and of tau factor and the of tau in microtubule Biol. PubMed Scopus Google Scholar). have been to tau being and a M.D. S. J. S. J. M. of tau Biol. PubMed Scopus Google Scholar). The tau protein is to a for several and the of tau that have been described is tau been to in vivo and in disease, and tau the and the been shown to of tau from microtubules I. Iqbal K. Tung Y.C. Quinlan M. Wisniewski H.M. Binder L.I. of the microtubule-associated protein tau in Alzheimer Natl. Acad. Sci. U.S.A. 1986; PubMed Scopus Google Scholar). further is in the that levels of several tau are in including T. K. R. V.M. Trojanowski J.Q. of tau protein is to in J. Full Text Full Text PDF PubMed Scopus Google Scholar), M. M. K. M. K. Y. is with tau in paired helical Full Text PDF PubMed Scopus Google Scholar), of proteins tau and Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), and J. M. tau that the of tau in a neuronal cell Natl. Acad. Sci. U.S.A. PubMed Scopus Google Scholar, N. to tau by in neuronal PubMed Scopus Google Scholar). on the to to disease in J. on tau as a for Alzheimer's 2011; PubMed Scopus Google Scholar). are physiological protein interactions the tau protein in to systematic for tau been except for its binding to microtubules (2.Weingarten M.D. Lockwood A.H. Hwo S.Y. Kirschner M.W. A protein factor essential for microtubule assembly.Proc. Natl. Acad. Sci. U.S.A. 1975; 72: 1858-1862Crossref PubMed Scopus (2207) Google Scholar), of the family of protein interacts with Cell Sci. Google Scholar, S. S. T. M. A. tau interactions with of and family Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), B. K. Binder L.I. shock protein tau and the of tau aggregates on 2011; PubMed Scopus Google K. A. P. association of tau protein with Natl. Acad. Sci. U.S.A. PubMed Scopus Google Scholar, J. T. M. T. M. R. T. molecular for in Full Text Full Text PDF PubMed Scopus Google Scholar), and on its with T.A. I. and of neuronal degeneration in Cell Biol. PubMed Scopus Google Scholar), Goedert M. R. M. interactions of with microtubule-associated protein for Alzheimer Natl. Acad. Sci. U.S.A. 1994; PubMed Scopus Google Scholar), a subset of B. J. M. Goedert M. A for in protein Natl. Acad. Sci. U.S.A. PubMed Scopus Google Scholar, L. B. P. L. M. T. Binder R. N. of PubMed Scopus Google Scholar), and protein and microtubule in Biol. Chem. 2011; Full Text Full Text PDF PubMed Scopus Google Scholar), Y. K. J. J. a and by microtubule Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar), and including protein binds to a for tau in Cell Sci. PubMed Scopus Google Scholar, T. P. J. RNA of microtubule-associated protein tau paired helical PubMed Scopus Google Scholar), is interactions the protein to this we to define molecular of the tau protein in the human neuroblastoma cell model. 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PubMed Scopus Google Scholar). interactome of and P301L tau in this that the P301L the of tau to to several of its including heat shock proteins, the proteasome and of the protein We further observed a of proteins binding to tau is by this with the subset of proteins that to the C-terminal half of a that had not been may to that the P301L to the in the microtubule domain, may reflect a whereby the the of in protein binding in the C-terminal half of tau. the may cause the subset of cellular tau that is from microtubules to it of its to a microtubule-associated of proteins that to its C-terminal of the for the binding data are consistent with a model whereby the propensity of P301L mutant tau to form aggregates J. J. P. M. K. M. M. K. J. A. Dickson D.W. Davies P. 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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.001 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it