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Record W2181064420 · doi:10.1039/c5mb00572h

Serum metabolomics uncovering specific metabolite signatures of intra- and extrahepatic cholangiocarcinoma

2015· article· en· W2181064420 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueMolecular BioSystems · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsBurnaby HospitalSimon Fraser University
FundersDivision of Electrical, Communications and Cyber Systems
KeywordsMetabolomicsMetaboliteMetabolomeBiologyComputational biologyCancer researchInternal medicineMedicineBioinformatics

Abstract

fetched live from OpenAlex

Cholangiocarcinoma (CC) accounts for approximately 25% of all hepatobiliary malignancies, including intra- and extrahepatic cholangiocarcinoma (ICC and ECC) and has a high mortality rate. The clinical manifestations of and liver function tests for the ICC and ECC diseases are too similar to distinguish between them. Diagnosis of ICC and ECC remains difficult because of the lack of sensitive diagnostic tests, although MRI and CT with endoscopic ultrasound provide useful diagnostic information in certain patients, but are invasive, time-consuming or expensive. Early detection is the most effective way to improve the clinical outcome of CC. Serum metabolomics provides a powerful platform for discovering novel biomarkers to improve early diagnosis. This study was performed using a metabolomics method which was used to select serum metabolites to be used for the early diagnosis of CC and to distinguish ICC from ECC. We comprehensively analyzed the serum metabolites in a total of 261 blood samples from CC patients and normal individuals. We found that 75 metabolites were filtered and identified from the serum metabolome, and the levels of 21-deoxycortisol and bilirubin significantly increased while the levels of lysoPC(14:0) and lysoPC(15:0) were significantly reduced in the CC group compared with the control groups. We measured the 4 metabolites of interest in an independent sample comprising 225 cases and 101 controls. Noticeably, external validation of the serum specimens further showed that the biomarker combination could differentiate ECC and ICC patients with high accuracy. This provides a new foundation for serum metabolomics to provide potential biomarkers for the early detection of CC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.066
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.244
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it