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Record W2186041081 · doi:10.26188/13038317

Risk profiling: Familial colorectal cancer

2020· article· en· W2186041081 on OpenAlex
Aung Ko Win, Driss Ait Ouakrim, Mark A. Jenkins

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

aboutThe title or abstract carries a Canadian signal from the geographic lexicon.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueFigshare · 2020
Typearticle
Languageen
FieldMedicine
TopicGenetic factors in colorectal cancer
Canadian institutionsnot available
Fundersnot available
KeywordsFamily historyColorectal cancerMedicineDiseaseGenetic testingRisk factorRisk assessmentCancerInternal medicineComputer science

Abstract

fetched live from OpenAlex

Family history of colorectal cancer is a well-established and consistently strong risk factor for this disease. However, simply counting the number of affected relatives is an imprecise measure of colorectal cancer risk. We have reviewed current colorectal cancer screening guidelines from Australia, New Zealand, Canada, the US, and UK, and found that all, including the Australian National Health and Medical Research Council 2005 guidelines, assign people to risk categories largely based on age and rudimentary metrics of family history and recommend screening regimens. We claim that these guidelines are not sufficiently precise for a large proportion of people within these categories, as there is a substantial variation in colorectal cancer risk, even for people with the same family history, and even for people with a predisposing mutation in the same gene, or set of genes. If there was a tool to estimate individual colorectal cancer risk based on all known risk factors for the disease - personal and family history of cancer (including ages, ages at diagnoses, and genetic relationships across multiple generations), all known genetic factors (rare high-risk genetic mutations as well as common genetic variants), environmental factors and personal characteristics - then accurate prediction of future risk of colorectal cancer (personalised risk) may be possible. The development and utility of such a comprehensive risk prediction tool is important for appropriate personalised clinical management, including targeted colorectal cancer screening.<br>

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.595
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.1960.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.054
GPT teacher head0.300
Teacher spread0.245 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it