Towards Event-Based Discourse Analysis of Biomedical Text
Bibliographic record
Abstract
Annotating biomedical text with discourse-level information is a well-studied topic. Several research efforts have annotated textual zones (e.g., sentences or clauses) with information about rhetorical status, whilst other efforts have linked and classified sets of text spans according to the type of discourse relation holding between them. A relatively new approach has involved annotating meta-knowledge (i.e., rhetorical intent and other types of information concerning interpretation) at the level of bio-events, which are structured representations of pieces of biomedical knowledge. In this paper, we report on the examination and comparison of transitions and patterns of event metaknowledge values that occur in both abstracts and full papers. Our analysis highlights a number of specific characteristics of event-level discourse patterns, as well as several noticeable differences between the types of patterns that occur in abstracts and full papers.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.008 | 0.026 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.018 | 0.011 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.007 | 0.006 |
| Open science | 0.002 | 0.003 |
| Research integrity | 0.002 | 0.002 |
| Insufficient payload (model declined to judge) | 0.003 | 0.002 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".