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Record W2217946606

Microfluidic Methods for High-Throughput Biological Screening

2015· dissertation· en· W2217946606 on OpenAlexfundno aff
Warren Lloyd Ung

Bibliographic record

VenueDigital Access to Scholarship at Harvard (DASH) (Harvard University) · 2015
Typedissertation
Languageen
FieldEngineering
TopicMicrofluidic and Bio-sensing Technologies
Canadian institutionsnot available
FundersDivision of Materials ResearchMaterials Research Science and Engineering Center, Harvard UniversityNatural Sciences and Engineering Research Council of CanadaNational Science FoundationAdvanced Research Projects AgencyHarvard University
KeywordsMicrofluidicsSortingPopulationDrop (telecommunication)sortNanotechnologyCell sortingMaterials scienceBiological systemThroughputComputer scienceChemistryBiologyAlgorithmCell
DOInot available

Abstract

fetched live from OpenAlex

Often in biology, rare individuals within a population dominate the population’s overall behavior, and we wish to extract those individuals for further analysis. We design a sorting instrument as a flexible platform for the development of novel microfluidic sorting techniques. We demonstrate a microfluidic cell sorter, which screens cells at rates approaching those of commercially-available fluorescence-activated cell sorters. This device incorporates a three-dimensional flow-focusing nozzle with a slanted ceiling groove to enhance the capabilities of a surface acoustic wave (SAW) transducer by harnessing the component of the SAW oriented normal to the plane of the substrate. The device achieves sorting at a rate of 9000 events/s with 54% purity and yields 89% purity, while operating at 1000 events/s; this level of performance approaches that of a FACS operating in its high-purity mode. We also present a rare event sorting technique, which can successfully extract desired droplets from a sample containing nearly a billion droplets. The technique yields pure samples after two rounds. The preliminary round is fast, capable of screening 10 ml of droplets at 100 ml/h, but each sort also captures many other droplets together with the droplet of interest. The second round of sorting enriches the sample to nearly 100% purity, using known designs for high purity drop-by-drop sorting. Thus, we devise a method, which can sort droplets rapidly and achieve high purity of few droplets from samples containing large numbers of droplets. The two disparate approaches to microfluidic sorting use a common platform to create new methods for sorting with biological applications.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.012
Threshold uncertainty score0.042

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.003
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.002
Science and technology studies0.0010.001
Scholarly communication0.0020.002
Open science0.0030.003
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0120.010

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.058
GPT teacher head0.311
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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