Selective Genotyping for Determination of a Major Gene Associated With Cranial Cruciate Ligament Disease in the Newfoundland Dog
Bibliographic record
Abstract
Cranial cruciate ligament disease (CCLD) is the leading cause of lameness in the dog. The objective of this study was to determine the most informative subset of animals on which to carry out selective genotyping for the identification of any major gene affecting CCLD. Two groups of animals were chosen for genotyping from candidate groups of animals having high probabilities (calculated from segregation analysis) for carrying zero and two copies, respectively, of the putative causative allele. A stochastic search algorithm was employed to search the solution space for the ‘best’ two groups of individuals for genotyping based on two alternating fitness functions. The first fitness function was designed to minimize the genetic relationship amongst dogs within groups for each group individually. The second fitness function was designed to maximize the genetic relationship amongst dogs between groups. This approach, and the ramifications of its use, are discussed.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.006 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".