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Record W2237830737 · doi:10.4141/cjps10001

Cloning of the gene encoding cucumber lumazine synthase and an analysis of its promoter activity in cucumber

2010· article· en· W2237830737 on OpenAlexvenueno aff
R. Wang, M. Chen, Fang Liao, Fang Jiang, Biao Ma, Y. Zhang, Mengxin Li

Bibliographic record

VenueCanadian Journal of Plant Science · 2010
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant tissue culture and regeneration
Canadian institutionsnot available
Fundersnot available
KeywordsCucumisGeneBiologyPromoterComplementary DNAEdman degradationCloning (programming)Gene expressionAmino acidMolecular biologyGeneticsPeptide sequenceBiochemistryBotany

Abstract

fetched live from OpenAlex

Promoters are an important regulatory element controlling the temporal and spatial expression of genes; thus, they play a critical role in genetic engineering by controlling target gene expression. Cucumber is a widely planted vegetable with a pleasant flavor and high economic value. However, most genetic engineering studies involving cucumber have utilized the CaMV 35S promoter, which mediates ubiquitous target gene expression. To identify a promoter that is highly expressed in cucumber fruit, total proteins from cucumber fruit were analyzed by two-dimensional gel electrophoresis. One spot which is highly expressed in fruit was sequenced from its N-terminus using the Edman degradation method. A total of 10 amino acids (Ala-Val-Arg-His-Ile-Ala-Gly-Ser-Leu-Ala) were sequenced. Based on these 10 residues, a cDNA fragment 905 bp in length was cloned using 3′- and 5′-RACE. The corresponding gene, which encodes 220 amino acids, showed 65-73% similarity to other plant lumazine synthases without the signal peptide. We also cloned the 2.1-kb upstream promoter sequence of this Cucumis sativus lumazine synthase (CsLS) and analyzed its promoter activity by GUS histochemical and fluorometric assays. Our results indicate that CsLS is highly expressed in cucumber fruit, whereas it is expressed at low levels in cucumber stems and leaves.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.250
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2010
Admission routes1
Has abstractyes

Explore more

Same venueCanadian Journal of Plant Science→Same topicPlant tissue culture and regeneration→French-language works237,207→