MétaCan
Menu
Back to cohort
Record W2256680000 · doi:10.1128/genomea.01629-15

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems

2016· article· en· W2256680000 on OpenAlexaff
James D. Flynn, Hisako Hirayama, Yasuyoshi Sakai, Peter F. Dunfield, Martin G. Klotz, Claudia Knief, Huub J. M. Op den Camp, Mike S. M. Jetten, Valentina N. Khmelenina, Yuri A. Trotsenko, J. Colin Murrell, Jeremy D. Semrau, Mette M. Svenning, Lisa Y. Stein, Nikos C. Kyrpides, Nicole Shapiro, Tanja Woyke, Françoise Bringel, Stéphane Vuilleumier, Alan A. DiSpirito, Marina Kalyuzhnaya

Bibliographic record

VenueGenome Announcements · 2016
Typearticle
Languageen
FieldEnvironmental Science
TopicMethane Hydrates and Related Phenomena
Canadian institutionsUniversity of AlbertaUniversity of Calgary
FundersJoint Genome InstituteSan Diego State UniversityU.S. Department of EnergyOffice of ScienceNational Science Foundation
KeywordsBiologyMarine ecosystemGenomeEcosystemStrain (injury)Hydrothermal ventEcologyGeneGeneticsHydrothermal circulation

Abstract

fetched live from OpenAlex

The genome sequences of Methylobacter marinus A45, Methylobacter sp. strain BBA5.1, and Methylomarinum vadi IT-4 were obtained. These aerobic methanotrophs are typical members of coastal and hydrothermal vent marine ecosystems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.810
Threshold uncertainty score0.998

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0320.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.209
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2016
Admission routes1
Has abstractyes

Explore more

Same venueGenome AnnouncementsSame topicMethane Hydrates and Related PhenomenaFrench-language works237,207