Bibliographic record
Abstract
In phylogenetic analysis, an important issue is to construct the confidence region\nfor gene trees from DNA sequences. Usually estimation of the trees is the initial\nstep. Maximum likelihood methods are widely applied but few tests are based on\ndistance methods. In this thesis, we propose a new test based on balanced minimum\nevolution. We first examine the normality assumption of pairwise distance estimates\nunder various model misspeci cations and also examine their variances, MSEs and\nsquared biases. Then we compare the BME method with the WLS method in true\ntree reconstruction under different variance structures and model pairs. Finally, we\ndevelop a new test for finding a confidence region for the tree based on the BME\nmethod and demonstrate its effectiveness through simulation.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.018 | 0.185 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.004 | 0.003 |
| Science and technology studies | 0.001 | 0.004 |
| Scholarly communication | 0.002 | 0.005 |
| Open science | 0.003 | 0.004 |
| Research integrity | 0.003 | 0.003 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".