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Record W2263222105

Conformational analysis of N-protonated-?-fluoro-?-vinyl-ethylamine, a protonated adrenaline model: an exploratory first-principle computational study

2008· article· en· W2263222105 on OpenAlexaffvenue
Dong Jin Lee, David H. Setiadi, Imre G Czismadia

Bibliographic record

VenueJournal of Undergraduate Life Sciences · 2008
Typearticle
Languageen
FieldChemistry
TopicMolecular Spectroscopy and Structure
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsConformational isomerismEthylamineProtonationDiastereomerChemistryEnantiomerBasis setMoleculeComputational chemistryStereochemistryDensity functional theoryOrganic chemistry
DOInot available

Abstract

fetched live from OpenAlex

The conformational landscapes of N-protonated-?-fluoro-?-vinyl-ethylamine, a fragmented model of L-adrenaline, were explored by full geometry optimization. The study was performed using restricted Hartree-Fock (RHF) formalism with a 3-21 contracted Gaussian (3-21G) basis set (RHF/3-21G level of theory). A complete conformational study of N-protonated-?-fluoro-?-vinyl-ethylamine was carried out from first principles of quantum mechanical computations using the Gaussian 03 (G03) program. The present study was designed to analyze the conformational characteristics of the molecule, a prerequisite to any full investigation of the adrenaline molecule. The relative energies of the various stable conformers of N-protonated-?-fluoro-?-vinyl-ethylamine were calculated for the R and S stereoisomers. For the R stereoisomer, the g-g+ was the most stable and the g+g+ conformer was the least stable. For the S stereoisomer, the g+g- and g-g- were the most and the least stable conformers, respectively. Through the combination analysis of both point and axis chirality, the enantiomeric and diastereomeric relationships of the twelve structures investigated were established. This study presents a preview of all existing stable conformers of adrenaline. Future studies must aim to computationally dock these conformers to the active site of the adrenergic receptor in order to determine which conformer has the greatest biological effect.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.822

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.311
Teacher spread0.278 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes2
Has abstractyes

Explore more

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