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Record W2265359783 · doi:10.11575/prism/28457

Timing recombinant prion protein conversion as a measure of prion activity in chronic wasting disease

2014· dissertation· en· W2265359783 on OpenAlexfundno aff
John G. Gray

Bibliographic record

VenuePRISM (University of Calgary) · 2014
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPrion Diseases and Protein Misfolding
Canadian institutionsnot available
FundersAlberta Livestock and Meat AgencyCanadian Food Inspection Agency
KeywordsChronic wasting diseaseRecombinant DNAWastingPrion proteinVirologyDiseaseMeasure (data warehouse)MedicineBiologyInternal medicineBiochemistryComputer scienceGeneData mining

Abstract

fetched live from OpenAlex

Chronic Wasting Disease (CWD) is a fatal neurological disease affecting cervids caused by prions. Infected cervids shed the CWD prion in bodily fluids and excrement, contaminating the environment and creating an agricultural and ecological calamity. Preclinical antemortem CWD testing method is demanded by CWD risk management programs. In vitro PrP-conversion assays have been developed as potential tools for such an approach with increasing sensitivity for prion detection. However, no method has been routinely employed thus far. Timing recombinant-PrP conversion into amyloid fibrils, seeded by elk CWD prion, as a diagnostic method is presented herein. The assay, termed “RePLICA”, is at least as sensitive for detecting elk CWD in brain tissues as Tg(CerPrP-M132)1536+/- and Tg(CerPrP-E226)5037+/- mouse bioassay models. The assay performs within a period of 35 hours, is consistently reproducible, and functions on elk brain and tonsil tissues. There are indications RePLICA has the potential to titre CWD infectivity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.352
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.219
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2014
Admission routes1
Has abstractyes

Explore more

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