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C‐terminal labelling of recombinant proteins using an engineered split‐intein

2009· article· en· W2273043506 on OpenAlexafffund
Gerrit Volkmann, Xiang‐Qin Liu

Bibliographic record

VenueThe FASEB Journal · 2009
Typearticle
Languageen
FieldMedicine
TopicMonoclonal and Polyclonal Antibodies Research
Canadian institutionsDalhousie University
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health Research
KeywordsInteinProtein tagLabellingProtein splicingRNA splicingRecombinant DNAPeptideProtein engineeringBiochemistryChemistryBiotinComputational biologyBiologyFusion proteinGeneEnzyme

Abstract

fetched live from OpenAlex

Site‐specific labelling of proteins has great potential to aid in the characterization of protein function, three‐dimensional structure, folding behaviour, and interaction with other proteins or small‐molecules. However, new and more efficient labelling methods are needed to satisfy the increasing demand for creating site‐specifically modified proteins. Here, a novel technique is presented to specifically label recombinant proteins at the C‐terminus using a peptide‐protein trans ‐splicing approach. A label is incorporated into a small synthetic peptide, and then transferred onto the C‐terminus of the protein of interest via a stable peptide bond formed by protein trans ‐splicing. We applied this method to introduce fluorescent labels and biotin at the C‐terminus of recombinant proteins, with biotin being potentially useful in creating protein microchips. The gentle chemistry of the trans ‐splicing method also allowed us to label receptor proteins on the surface of eukaryotic cells, indicating a broad applicability of our labelling technique. Research support was provided by CIHR and NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.336
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2009
Admission routes2
Has abstractyes

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