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Record W2280121081 · doi:10.18632/oncotarget.6983

Prostate extracellular vesicles in patient plasma as a liquid biopsy platform for prostate cancer using nanoscale flow cytometry

2016· article· en· W2280121081 on OpenAlexafffundabout
Colleen N. Biggs, Khurram Siddiqui, Ali A. Al‐Zahrani, Siddika Pardhan, Sabine Brett, Qiuquan Guo, Jun Yang, Philipp Wolf, Nicholas Power, Paul N. Durfee, Connor D. MacMillan, Jason L. Townson, Jeffrey Brinker, Neil Fleshner, Jonathan I. Izawa, Ann F. Chambers, Joseph L. Chin, Hon S. Leong

Bibliographic record

VenueOncotarget · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicExtracellular vesicles in disease
Canadian institutionsUniversity Health NetworkUniversity of TorontoLawson Health Research InstituteWestern University
FundersProstate Cancer CanadaLawson Health Research InstituteMovember FoundationSanofi
KeywordsProstate cancerMedicineLiquid biopsyExtracellular vesiclesProstateCancerUrologyFlow cytometryInternal medicineImmunologyBiology

Abstract

fetched live from OpenAlex

// Colleen N. Biggs 1,3,* , Khurram M. Siddiqui 1,3,* , Ali A. Al-Zahrani 1,3,7 , Siddika Pardhan 1,3 , Sabine I. Brett 1,3 , Qiu Q. Guo 8 , Jun Yang 8 , Philipp Wolf 6 , Nicholas E. Power 1,2,3 , Paul N. Durfee 5 , Connor D. MacMillan 1,3 , Jason L. Townson 5 , Jeffrey C. Brinker 5 , Neil E. Fleshner 4 , Jonathan I. Izawa 1,2,3 , Ann F. Chambers 2 , Joseph L. Chin 1,2,3 and Hon S. Leong 1,3 1 Department of Surgery, Western University, London, Canada 2 Department of Oncology, Western University, London, Canada 3 Translational Prostate Cancer Research Laboratory, Lawson Health Research Institute, London, Canada 4 University Health Network, University of Toronto, Toronto, Canada 5 Sandia National Laboratories, Albuquerque, NM, USA 6 Department of Urology, University Medical Center Freiburg, Freiburg, Germany 7 Department of Urology, University of Dammam, Dammam, Saudi Arabia 8 Department of Mechanical and Materials Engineering, Western University, London, Canada * These authors have contributed equally to this work Correspondence to: Hon S. Leong, email: // Keywords : prostate microparticles, extracellular vesicles, nanoscale flow cytometry, prostate cancer, liquid biopsy Received : December 28, 2015 Accepted : January 16, 2016 Published : January 22, 2016 Abstract Background: Extracellular vesicles released by prostate cancer present in seminal fluid, urine, and blood may represent a non-invasive means to identify and prioritize patients with intermediate risk and high risk of prostate cancer. We hypothesize that enumeration of circulating prostate microparticles (PMPs), a type of extracellular vesicle (EV), can identify patients with Gleason Score≥4+4 prostate cancer (PCa) in a manner independent of PSA. Patients and Methods: Plasmas from healthy volunteers, benign prostatic hyperplasia patients, and PCa patients with various Gleason score patterns were analyzed for PMPs. We used nanoscale flow cytometry to enumerate PMPs which were defined as submicron events (100-1000nm) immunoreactive to anti-PSMA mAb when compared to isotype control labeled samples. Levels of PMPs (counts/µL of plasma) were also compared to CellSearch CTC Subclasses in various PCa metastatic disease subtypes (treatment naïve, castration resistant prostate cancer) and in serially collected plasma sets from patients undergoing radical prostatectomy. Results: PMP levels in plasma as enumerated by nanoscale flow cytometry are effective in distinguishing PCa patients with Gleason Score≥8 disease, a high-risk prognostic factor, from patients with Gleason Score≤7 PCa, which carries an intermediate risk of PCa recurrence. PMP levels were independent of PSA and significantly decreased after surgical resection of the prostate, demonstrating its prognostic potential for clinical follow-up. CTC subclasses did not decrease after prostatectomy and were not effective in distinguishing localized PCa patients from metastatic PCa patients. Conclusions: PMP enumeration was able to identify patients with Gleason Score ≥8 PCa but not patients with Gleason Score 4+3 PCa, but offers greater confidence than CTC counts in identifying patients with metastatic prostate cancer. CTC Subclass analysis was also not effective for post-prostatectomy follow up and for distinguishing metastatic PCa and localized PCa patients. Nanoscale flow cytometry of PMPs presents an emerging biomarker platform for various stages of prostate cancer.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.268
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations89
Published2016
Admission routes3
Has abstractyes

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