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Record W2289365872 · doi:10.2527/af.2016-0010

Genomics for phenotype prediction and management purposes

2016· article· en· W2289365872 on OpenAlex
Tong Yin, S. König

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueAnimal Frontiers · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsnot available
FundersShandong Agricultural UniversityBundesministerium für Bildung und ForschungShandong UniversityUniversity of Guelph
KeywordsHeritabilityBiologyTraitInbreedingGenotypingRuns of HomozygosityGeneticsSNPHerdGenomicsQuantitative trait locusGenomic selectionComputational biologyEvolutionary biologyGenotypeSingle-nucleotide polymorphismGenomeComputer scienceGenePopulationEcologyMedicine

Abstract

fetched live from OpenAlex

Pre-assuming accuracies of genomic breeding values larger than 0.7 for a moderate heritability production trait, and larger than 0.5 for a low heritability functional trait, additional profit from genotyping female calves or heifers compensates costs for genotyping in commercial herds. Herd management will be improved by including SNP information into electronically mating software, e.g., through the exploitation of non-additive genetic effects and via controlling of inbreeding and genetic relationships. Random forest methodology can infer binary disease phenotypes in validation sets with moderate accuracy, also for a small number of diseased genotyped animals in training sets. Genomic random regression models can be used to predict genomic breeding values for animals without phenotypes in, e.g., harsh environments.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.528
Threshold uncertainty score0.263

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.210
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it