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Record W2293319155 · doi:10.14288/1.0075276

Biodegradation of lipids by wood sapstaining OPHIOSTOMA SPP

2009· article· en· W2293319155 on OpenAlexaffabout
Yong Gao

Bibliographic record

VenuecIRcle (University of British Columbia) · 2009
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEnzyme Catalysis and Immobilization
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsBiodegradationOphiostomaChemistryPulp and paper industryEcologyBiologyFungusBotanyEngineering

Abstract

fetched live from OpenAlex

Canada is the largest exporter of softwood lumber in the world. Sapstain caused by fungi is a costly problem for the Canadian lumber industry. To maintain and increase future sales and exports of lumber requires not only effective, but also environmentally acceptable anti-sapstain methods. A thorough understanding of the physiological and biochemical features of sapstaining fungi should facilitate the development of new methods of protection. This work was carried out to determine the available lipid nutrients in wood and to understand the biodegradation mechanisms of lipids by sapstaining Ophiostoma species. Lodgepole pine (Pinus contorta Dougl. var. latifolia Engelm.) constitutes the greatest volume of wood harvested in British Columbia. As with all wood species, the freshly sawn sapwood is susceptible to sapstain. The total extractives content in the sapwood at the breast height of a 35-year-old lodgepole pine tree was 1.9-2.2% of oven dry weight, which included 1.1-1.3% triglycerides (TG), 0.02-0.03% free fatty acids (FA), 0.3-0.4% free resin acids (RA), and 0.15- 0.21% steryl esters and waxes (SEAV). A considerably higher content of extractives was present in heartwood, i.e., 9.7-12.4%, including 0.6-0.7% TGs, 0.8-1.1% free FAs, 4.0-5.6% free RAs, and 0.25-0.33% SE/Ws. The wood TGs were composed mainly of oleic (18:1), linoleic (18:2), linolenic (18:3) and palmitic (16:0) acids. The dominant RA was palustric acid, followed by abietic, neoabietic, dehydroabietic, isopimaric, pimaric, and sandaracopimaric acids. The ability of three sapstaining fungal species, Ophiostoma piceae 387N, O. ainoae 701 A, and O. piliferum 55H to degrade and utilize the major lipids in the sapwood of lodgepole pine and trembling aspen (Populus tremuloides Michx.) was investigated. The fungal growth rate in wood was monitored by quantifying ergosterol extracted from colonized wood. After two weeks colonization, the TGs in wood were degraded by 50% to 80%, which resulted in an accumulation of free FAs in the wood. Lipases (glycerol ester hydrolases, EC 3.1.1.3) are the enzymes responsible for hydrolyzing TGs into glycerol and FAs which are assimilable by fungal cells. Extracellular lipase activity of O. piceae 387N was detected both in colonized wood and in liquid culture. The effect of various factors (carbon sources, nitrogen sources, and medium pH) on the growth and lipase activity of O. piceae 387N were examined in liquid culture. The extracellular lipase secretion was enhanced in the presence of triglycerides. The composition of a medium was optimized for a high extracellular lipase production, which contained 2% olive oil as a carbon source and 0.5% ammonium sulfate and 3% peptone as nitrogen sources with an initial medium pH of 5.0. A major extracellular lipase was purified from the liquid culture filtrates of O. piceae 387N by hydrophobic interaction chromatography and anion exchange chromatography. This lipase was characterized as a monomer with a molecular weight of 35 kDa, and was glycosylated, containing 10.1% carbohydrates. It was resolved as a single band on SDS-PAGE (sodium dodecyl sulfate- polyacrylamide gel electrophoresis) gels, whereas 3 bands at pi's 4.3, 4.1 and 3.8 were observed on LEF (isoelectric focusing) gels. Lipolytic stain demonstrated that the three bands on IEF gels were lipolytically active. The 3 isoforms were found to have a same N - terminal sequence as D¹-V²-S³-V⁴-T⁵-T⁶-T⁷-D⁸-I⁹-D¹⁰-A¹¹-L¹²-A¹³-F¹⁴-F¹⁵-T¹⁶-Q¹⁷-W¹⁸-A¹⁹-G²⁰. The purified O. piceae 387N lipase was stable at pH's 4 to 8 and at temperatures below 40°C. The pH and temperature optima for activity were approximately pH 5.2 and 30°C, respectively. Enzyme activity was not influenced by N-ethylmaleimide, P-mercaptoethanol, and dithiothreitol, was slightly enhanced by Ca²⁺ and Mn²⁺, and was severely inhibited by Hg and Fe³⁺, diethyl pyrocarbonate, diethyl /?-nitrophenyl phosphate, butyric acid, caproic acid, and SDS. The lipase showed high specificity toward substrates with intermediate and long chain FA residues, and belonged to a group of 1(3) positional specific lipases. The rate of hydrolysis of the lipase toward a triglyceride (l,3-dipalmitoyl-2-oleoyl-glycerol) was 25-50 fold higher than that toward the waxes (oleyl esters) and cholesteryl esters. Finally, it was conclusively shown that the purified lipase could effectively release fatty acid residues from the triglycerides isolated from wood. The data and information obtained in this work have contributed to the understanding of the physiological and biochemical features of sapstaining Ophiostoma species. The large amounts of various lipids in wood, in particular TGs and FAs, are important carbon and energy sources for the sapstaining fungi, which are capable of secreting extracellular lipases to degrade TGs. The information implies that the growth of sapstaining fungi may be hindered by disrupting the metabolic processes of lipid utilization, or by applying biological competitors which are more efficient in assimilating lipids and other nutrients in wood.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.964
Threshold uncertainty score0.424

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.176
Teacher spread0.171 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2009
Admission routes2
Has abstractyes

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