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Record W2298784266 · doi:10.1128/genomea.00069-16

Improved High-Quality Draft Genome Sequence of the Eurypsychrophile <i>Rhodotorula</i> sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica

2016· article· en· W2298784266 on OpenAlexafffund
Jacqueline Goordial, Isabelle Raymond‐Bouchard, Robert Riley, Jennifer Ronholm, Nicole Shapiro, Tanja Woyke, Kurt LaButti, Hope Tice, Mojgan Amirebrahimi, Igor V. Grigoriev, Charles W. Greer, Corien Bakermans, Lyle G. Whyte

Bibliographic record

VenueGenome Announcements · 2016
Typearticle
Languageen
FieldEnvironmental Science
TopicPolar Research and Ecology
Canadian institutionsNational Research Council CanadaMcGill University
FundersNatural Sciences and Engineering Research Council of CanadaJoint Genome InstituteOffice of ScienceNational Aeronautics and Space AdministrationU.S. Department of EnergyNational Science Foundation
KeywordsRhodotorulaPermafrostBiologyStrain (injury)Whole genome sequencingGenomeElevation (ballistics)GeneYeastEcologyGeneticsAnatomy

Abstract

fetched live from OpenAlex

Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.842
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.268
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2016
Admission routes2
Has abstractyes

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